From AureoWiki
Jump to: navigation, search
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07490 [old locus tag: SACOL1468 ]
  • pan locus tag?: SAUPAN003864000
  • symbol: SACOL_RS07490
  • pan gene symbol?:
  • synonym:
  • product: membrane protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS07490 [old locus tag: SACOL1468 ]
  • symbol: SACOL_RS07490
  • product: membrane protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1478162..1478866
  • length: 705
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1478162..1478866) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGTATAATGAAATTTTAGGACTAGTTACGTTTATTGCAACGTTCGTGCTTATGGTACTT
    ATGTATCGCTTTTTTGGTAAACAAGGTTTAATTGCATGGGTTGCAATTGGCACAATCATT
    GCCAACATACAAGTGATTAAAACTGTAGAAATCTTTGGTATTTCAGCAACTTTAGGTAAT
    GTCATGTTTGCTTCTATTTATTTAGCAACAGATATATTAAACGATATTTATGGGCGTAGA
    GTTGCAAAAAGAGCAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATG
    CAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCA
    ATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAA
    CATATTGATGTATTTATCTTTTCACTAATTAAAAAAGTATTTAGTTCTGATAAAACGTTT
    TTCATCCGTGCATATGGTAGTACATTTTTAAGCTCAATAATTGATACAGCTTTATTTGTA
    GCTATCGCATTTATCGGAAGTTTACCTGGTACAGTTGTATTTGAAATATTTATTACAACG
    TACGTATTAAAATTAGCTTCAACAGTTTTCAATGTACCATTTGGATATATTGCTAAATCA
    TTTTATCGTAAAGGTAAGATTGATAAGTTAGATCAAGGCTATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    705

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS07490 [old locus tag: SACOL1468 ]
  • symbol: SACOL_RS07490
  • description: membrane protein
  • length: 234
  • theoretical pI: 9.87834
  • theoretical MW: 26030.9
  • GRAVY: 0.900855

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Hypothetical proteinsConservedconserved hypothetical integral membrane protein (TIGR00697; HMM-score: 192.9)
  • TheSEED:
  • PFAM:
    no clan definedVut_1; Putative vitamin uptake transporter (PF02592; HMM-score: 147.6)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 7
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.137
    • Ymax_pos: 42
    • Cmax: 0.139
    • Cmax_pos: 33
    • Smax: 0.223
    • Smax_pos: 31
    • Smean: 0.106
    • D: 0.125
  • predicted transmembrane helices (TMHMM): 7

Accession numbers[edit source | edit]

  • GI: 446204316 NCBI
  • RefSeq: WP_000282171 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MYNEILGLVTFIATFVLMVLMYRFFGKQGLIAWVAIGTIIANIQVIKTVEIFGISATLGNVMFASIYLATDILNDIYGRRVAKRAVWLGFSSTLIMIIVMQLSLHFIPAPEDMAQKALHAIFDVVPRIALGSIVAYIIGQHIDVFIFSLIKKVFSSDKTFFIRAYGSTFLSSIIDTALFVAIAFIGSLPGTVVFEIFITTYVLKLASTVFNVPFGYIAKSFYRKGKIDKLDQGY

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS07490 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]