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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07540 [old locus tag: SACOL1480 ]
  • pan locus tag?: SAUPAN003895000
  • symbol: SACOL_RS07540
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS07540 [old locus tag: SACOL1480 ]
  • symbol: SACOL_RS07540
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1518288..1521728
  • length: 3441
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1518288..1521728) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

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    61
    121
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    481
    541
    601
    661
    721
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    841
    901
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    1021
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    1141
    1201
    1261
    1321
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    1501
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    1801
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    3001
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    3241
    3301
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    3421
    ATGATTAATAAAGAACAATTAGATCTTTTATATAAATTAAAAAAAGAAGTTGAAAAGTCG
    CGAAATGAAGCACTTTTACATACAATTAACCAAGTAATTAAGAAAGTATATTTGCAGCAA
    TATACATGTTCGTTCGTTGGACATTTTTCTGCAGGTAAATCGACACTGATAAATTTATTA
    ATTGAACAAGATATCTTACCAAGTTCACCTGTACCAACGACAAGTAATACTGCTATTGTG
    TCAGTTTCAGACAATCACGATATTATTGCTAATTTGCCGAATCAAACGTATGCCAAATTA
    TCTAATTATGATGAAGTAAGGGAAATGAATCGCCAAAATGTCGACGTTGAATCTGTAGAA
    ATTAATTTTCAATCAGCTAAATTTGAAAATGGGTTTACGTTGCAAGATACACCAGGTGTT
    GATTCAAATGTTGCATCACATCAGTCAATAACAGAACAATATATGTATACAAGTAATATG
    ATATTTTATACGGTTGACTATAACCACGTTCAATCTGAACTTAACTTTAAGTTTATGAAG
    CATATAAATGATGTTGGAATACCTGTTGTGTTTATCATTAATCAAATTGACAAGCATCAA
    GACGATGAATTGTCATTCTCTACGTTTAAATCTCGAGTTGAAAAATCAATTGCAGATTGG
    GGTATTAAATTAGAACGCACCTTTTATGTATCTAAATTTGATCACCCTGAAAATGAACTT
    GAAGTATTATCAAGTTATCTAATTTCATTAGATCAACATAGAGAGACAATAGAGGATTAT
    ACATCAAGAACGGTTGAATACATTACCGAAGCTCAGCTAGATTACATTCAGTCTGAAATT
    CAGGAAGTACTAGAAGATTTAGGTATCGAAGAAGCGGAGTTTGAACAAGCATTTTTAAAT
    AGTCAACAACATCAAGCAATTAGTGAAGAGGCACAACTTTTAAATAATCCAGATGAATTA
    ATGGCATTTTTAAAGAATAAGCGTAAAAATATTTTAGAAAATGCATACATTATGCCGCAT
    AATATGAGAGAAATGTTACGAAGTTATTTGGAAAGTATGTCTCAAGACTTTAATGTTGGC
    GGATTTTTTAATAAAAAGAAGAAAAAACTACAAATTCAACAACAGCGATTATTAACAGCG
    ACAGATGCGTTACAAGAACATGTTAATCAACAAATTCGTCAACCAATGCGAGAAGATATG
    TCATTTGTTACGCGTTTTATCAATAAAAAAGAAGCTTCAGATAAAGTATTAAATCAGCAT
    TATGACGTTAAGCCAGAAATGATTGAAGGTTTATATCAACCACAAACATCAATCAGCAAT
    ACTTATGTACTTACATTTTCAGACGAAGTGGTTAAAGCCATTAAGAAATATGTTGAACAA
    CAATCAACACCAATTTTTAAAGAAATAATAGAAAATGTGCAGGCAGATGAATTACCAACA
    GAAGAAAGTGATGATTTAAAAGAATATCAACGTTATACAGAATTAAATGAGCTGCGTCAG
    TCATTGACGACTAAGAATTATCGTCACTACTATATTCATTTAGATGAATCTCTAGATAAA
    TTAATAGGTCGACAAGAGACAACATATCAAGTGGCTACTGATAATGCTCAGGATAATCGT
    GATAATCAGCAGCTAAATCAAAATACAGCTACAACAAATATGTCTATAGATATTCAAAAA
    GCGCTTGATATAATTTCGGATGTGCCTTTGTTCAAGCGTACAAAGCAAGATATCCACGAA
    ACATTAACACGTATAGATAATAAATTAATAAAAATAGGTGTATTTGGAACATTTAGTGCT
    GGTAAAAGTAGTTTGATAAATGCATTATTAGGCGAGCATATTTTAGTCAGTTCTCCAAAT
    CCTACTACAGCAGCTACTACAGAAATATCTTATGGAGACGAGAGTTATATAACGCTAAAA
    TCACAATCGCAATTATTAGATGAAATTAATGCAGTAGTTGAATACCAAGATATGTCTTAT
    TCGACTATAGAAGACTTTATTAATTCAGATTTAGAAAAGTTAAAATCACATTTAAATAAA
    AATCAACTCGCTTTTATTCAGGCAGTTGAAAAACATTATAAATTGTATGTCAATATGTTG
    GAAAATGGAGAAAAACATGCCATTAATCAACAGGAATTGAAAAAGTGGAGTGCAGAAGAT
    GAATATGCAACATTTGTTAAGACAGTACACATTGCATTAATGCATGATTGGTTAAAAGGT
    AAAATAATTGTTGATTCATTAGGGCTACACTCAAATAACCAAAGGCATACAAATGAAACC
    GAACAAATTTTAACTTCTTCAGACTTAATATTGTATGTAAGTTATTTTAATCATTCATTT
    ACTGATAATGACAAAGCGTTTATAGAACACATGAAAGATATGAACCAGTTGAATGAAAAC
    CAAGCATTTAAAATGGTAATTAATGCTGCTGATTTAGCAGAAAGTCAAGATGATCTTGAA
    GCAGTTGAAACATATGTATCAGATGCATTAAGACAAGTACACTTACAATCAGACATTTTT
    GCTGTATCAAGTCGAAATGCATTGCAAGCTGAAGATAAGGGCATTGATCAATTAAAACAA
    AGCATACAACAATTTGTTGATGTTGAATCTAAATCAATTTTAGAACAACAAATGATTCAT
    CAGCTTCAACAAATGGATCGTTCTTATGTAGAGATGATTACAGAATTTGAAACAAATAAA
    GCTGATATTTCACGTCGCCAACAAAGGTTAACAGATTATAAAGATAAACAGCGTTTACAA
    CATCAATTAATTGATGCGACGTTACAACATACAGACAACGAAGTTGAAGAACAAGTTTAT
    CATTTAAATGCCCGTTTAAAACTACAACTACTTGACGATGTTAAATCAGTGTTTAATTCT
    CAAATGACGCAAAATAGTGATTTTAATGAAGAAAAGAAAGTGTCTACGAGAGTATACTTA
    GATCAAATTCATCAACGATTGTTTTTAGAGCAATCTTTAATTACAGAACGTATAAAAAAA
    TACTTTAATAAGCAACTCACTGAGCAAATTGCACCAATCGTTCAACAATTAGCAGATTTA
    CATGTCATTATTAATCCTCAGTTTAACTTTGAATCAGCTAATATAGAGCAACCATTATTG
    CACATCGATTTCAACGATATGCTAAATGCATTGCCTAAACAATTAACAAAACGTAAAATT
    TTGAATCCAAATGGGCAAAGAGATATACATGAATCAATTTGTCAAAGTACGTTAGGATTA
    TTACAACCACAAATGGGATTATTGAGGCAACAGCTTGAATTATATGTAAAGCAAATGGCT
    GTAGAAGCTGAATCGCAATTTGAAAGTTTTGAAGCTAATATTCAAACGCAAATAAACGAT
    TTATTAGCATTTGATTTAGATACAACACTTATCAATCAATTGAAAGATAAACATCAACAA
    CTGAAAACTATTTTATATTAA
    60
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    3000
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    3120
    3180
    3240
    3300
    3360
    3420
    3441

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS07540 [old locus tag: SACOL1480 ]
  • symbol: SACOL_RS07540
  • description: hypothetical protein
  • length: 1146
  • theoretical pI: 4.81559
  • theoretical MW: 133107
  • GRAVY: -0.568063

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingProtein synthesisOtherribosome-associated GTPase EngA (TIGR03594; HMM-score: 67.4)
    Unknown functionGeneralsmall GTP-binding protein domain (TIGR00231; HMM-score: 55.5)
    Genetic information processingProtein fateProtein modification and repair[FeFe] hydrogenase H-cluster maturation GTPase HydF (TIGR03918; HMM-score: 50)
    Genetic information processingProtein synthesisOtherGTP-binding protein Era (TIGR00436; HMM-score: 28.5)
    Genetic information processingProtein synthesisOtherribosome biogenesis GTP-binding protein YsxC (TIGR03598; HMM-score: 28.1)
    MetabolismEnergy metabolismAmino acids and aminesethanolamine utilization protein, EutP (TIGR02528; HMM-score: 19)
  • TheSEED:
  • PFAM:
    P-loop_NTPase (CL0023) Dynamin_N; Dynamin family (PF00350; HMM-score: 209.6)
    MMR_HSR1; 50S ribosome-binding GTPase (PF01926; HMM-score: 63.2)
    FeoB_N; Ferrous iron transport protein B (PF02421; HMM-score: 26.4)
    RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 25.5)
    GTP_EFTU; Elongation factor Tu GTP binding domain (PF00009; HMM-score: 20.2)
    ArgK; ArgK protein (PF03308; HMM-score: 14.9)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 13.5)
    no clan definedE1_FCCH; Ubiquitin-activating enzyme E1 FCCH domain (PF16190; HMM-score: 12.9)
    P-loop_NTPase (CL0023) AAA_18; AAA domain (PF13238; HMM-score: 11.9)
    AAA_28; AAA domain (PF13521; HMM-score: 6.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.135
    • Ymax_pos: 13
    • Cmax: 0.106
    • Cmax_pos: 25
    • Smax: 0.219
    • Smax_pos: 5
    • Smean: 0.183
    • D: 0.153
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446531175 NCBI
  • RefSeq: WP_000608521 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MINKEQLDLLYKLKKEVEKSRNEALLHTINQVIKKVYLQQYTCSFVGHFSAGKSTLINLLIEQDILPSSPVPTTSNTAIVSVSDNHDIIANLPNQTYAKLSNYDEVREMNRQNVDVESVEINFQSAKFENGFTLQDTPGVDSNVASHQSITEQYMYTSNMIFYTVDYNHVQSELNFKFMKHINDVGIPVVFIINQIDKHQDDELSFSTFKSRVEKSIADWGIKLERTFYVSKFDHPENELEVLSSYLISLDQHRETIEDYTSRTVEYITEAQLDYIQSEIQEVLEDLGIEEAEFEQAFLNSQQHQAISEEAQLLNNPDELMAFLKNKRKNILENAYIMPHNMREMLRSYLESMSQDFNVGGFFNKKKKKLQIQQQRLLTATDALQEHVNQQIRQPMREDMSFVTRFINKKEASDKVLNQHYDVKPEMIEGLYQPQTSISNTYVLTFSDEVVKAIKKYVEQQSTPIFKEIIENVQADELPTEESDDLKEYQRYTELNELRQSLTTKNYRHYYIHLDESLDKLIGRQETTYQVATDNAQDNRDNQQLNQNTATTNMSIDIQKALDIISDVPLFKRTKQDIHETLTRIDNKLIKIGVFGTFSAGKSSLINALLGEHILVSSPNPTTAATTEISYGDESYITLKSQSQLLDEINAVVEYQDMSYSTIEDFINSDLEKLKSHLNKNQLAFIQAVEKHYKLYVNMLENGEKHAINQQELKKWSAEDEYATFVKTVHIALMHDWLKGKIIVDSLGLHSNNQRHTNETEQILTSSDLILYVSYFNHSFTDNDKAFIEHMKDMNQLNENQAFKMVINAADLAESQDDLEAVETYVSDALRQVHLQSDIFAVSSRNALQAEDKGIDQLKQSIQQFVDVESKSILEQQMIHQLQQMDRSYVEMITEFETNKADISRRQQRLTDYKDKQRLQHQLIDATLQHTDNEVEEQVYHLNARLKLQLLDDVKSVFNSQMTQNSDFNEEKKVSTRVYLDQIHQRLFLEQSLITERIKKYFNKQLTEQIAPIVQQLADLHVIINPQFNFESANIEQPLLHIDFNDMLNALPKQLTKRKILNPNGQRDIHESICQSTLGLLQPQMGLLRQQLELYVKQMAVEAESQFESFEANIQTQINDLLAFDLDTTLINQLKDKHQQLKTILY

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS07540 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]