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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS09055 [old locus tag: SACOL1770 ]
  • pan locus tag?: SAUPAN004375000
  • symbol: SACOL_RS09055
  • pan gene symbol?:
  • synonym:
  • product: glycerophosphoryl diester phosphodiesterase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS09055 [old locus tag: SACOL1770 ]
  • symbol: SACOL_RS09055
  • product: glycerophosphoryl diester phosphodiesterase
  • replicon: chromosome
  • strand: -
  • coordinates: 1809354..1810097
  • length: 744
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1809354..1810097) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
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    361
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    481
    541
    601
    661
    721
    ATGACTCTGAATAAACTGAAAGATGAATTACAAATTGTTTCGCACCGTGGATTGCCGAGT
    GATTTTCCTGAAAATACAATGGTCGGTTATCGAGAGGTAATGGGGCTCAATGTTGCTATG
    TTAGAAATAGATGTTCATTTGACCAAAGACCAACATTTTGTTGTGATACATGATGAAACA
    ATTGATAGAACATCGGATGGTAAGGGGCGTATTGCTGATTACACATTATCGCAATTAAAA
    TCATTTGATTTTGGTAGTTATAAAGATGTTGCTTTTAAGGGAGAACGAATACCCACGTTA
    GATGAAGTACTTTCATTATGCTTAAAGTATGATAAAAAGCTATTGATTGAATTGAAAAGT
    CCGAATTTATATCCAGAAATAGAATGTAAATTGCTGGCATTTTTGGAAGAAAAGAAAGTC
    GATGCGACACAAGTAGTTATACAATCTTTTGATATCGAATGCATCGAAAAGTTAAACACA
    TTGGGCAGTATATATGAATTAGGTGTGCTTTGTAGTAAACGTAATTATTGGTATAAAAAG
    CCAAACTTTTCAAGAATTGCTCAAATTGCTAGTTATGTTAATCCTAATTATGCATTAGTG
    ACCAGAAAATTTGTTGATAAAGCACATCATCATCAATTACAGGTTATGCCATACACAGTT
    AATAAATTGAAAACTGGAGAAAAATTAAGACAAATGGGTGTAGATGGATTAATTACAGAT
    AATCCGAAATTATTTATTAAGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    744

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS09055 [old locus tag: SACOL1770 ]
  • symbol: SACOL_RS09055
  • description: glycerophosphoryl diester phosphodiesterase
  • length: 247
  • theoretical pI: 7.97488
  • theoretical MW: 28404.8
  • GRAVY: -0.276923

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    PLC (CL0384) GDPD; Glycerophosphoryl diester phosphodiesterase family (PF03009; HMM-score: 145.5)
    GDPD_2; Glycerophosphoryl diester phosphodiesterase family (PF13653; HMM-score: 22.6)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.118
    • Ymax_pos: 13
    • Cmax: 0.104
    • Cmax_pos: 32
    • Smax: 0.158
    • Smax_pos: 1
    • Smean: 0.137
    • D: 0.126
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446096427 NCBI
  • RefSeq: WP_000174282 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MTLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDETIDRTSDGKGRIADYTLSQLKSFDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKSPNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNTLGSIYELGVLCSKRNYWYKKPNFSRIAQIASYVNPNYALVTRKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITDNPKLFIK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS09055 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]