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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS10375 [old locus tag: SACOL1985 ]
  • pan locus tag?: SAUPAN004958000
  • symbol: SACOL_RS10375
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS10375 [old locus tag: SACOL1985 ]
  • symbol: SACOL_RS10375
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2048405..2049433
  • length: 1029
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (2048405..2049433) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGACAAATGGATATATTGGTTCTTACACTAAAAAGAATGGTAAAGGGATTTATCGTTTT
    GAATTAAACGAAAATCAGTCACGTATTGATTTATTAGAAACAGGATTTGAATTAGAAGCG
    TCTACATATTTGGTGCGTAATAATGAAGTTTTATATGGAATCAACAAAGAAGGAGAACAA
    TGCGGTGTTGCAAGTTTGAAAATTGATGACAATGGTGAATTGCATTTATTAAATAAATGT
    TTGTCTTCAAAAGCTGGTACAGGTTGTTATGTATCGATTTCAGAAGATAAACGATATTTA
    TTTGAAGCGGTATATGGTGCTGGCATCATACGTATGTATGAATTAAATACGCACACAGGT
    GAAATTATACGTCTAATTCAAGAACTTGCACATGATTTTCCAACAGGTACACATGAAAGA
    CAAGATCATCCACACGCACATTATATTAATCAAACTCCAGATGGTAAGTACGTTGCAGTA
    ACAGATTTAGGTGCTGATCGTATCGTTACTTATAAATTTGATGACAACGGGTTTGAATTT
    TATAAAGAATCTTTATTTAAAGATAGTGATGGGACAAGACATATTGAATTTCATGATAAT
    GGAAAATTTGCTTATGTCGTACACGAATTATCAAATACTGTGAGTGTTGCAGAATATAAT
    GACGGTAAATTTGAAGAGCTCGAGCGTCATTTAACAATTCCTGAAAACTTTGATGGAGAT
    ACTAAACTTGCAGCAGTGCGTTTATCTCATGATCAACAATTCTTATATGTATCTAATAGA
    GGGCATGATAGCATTGCAATTTTTAAAGTTCTTGATAATGGTCAACACTTAGAACTAGTA
    ACAATTACTGAAAGTGGTGGTCAATTCCCAAGAGATTTTAATATTGCCTCATCAGATGAC
    CTTTTAGTTTGTGCTCATGAGCAAGGAGATTCAGTTGTAACTGTTTTCGAAAGAAATAAA
    GAAACAGGTAAAATTACGCTATGTGATAACACTCGTGTAGCATCTGAAGGTGTATGTGTC
    ATATTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1029

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS10375 [old locus tag: SACOL1985 ]
  • symbol: SACOL_RS10375
  • description: hypothetical protein
  • length: 342
  • theoretical pI: 4.83508
  • theoretical MW: 38546.5
  • GRAVY: -0.460234

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    PQQ-dependent catabolism-associated beta-propeller protein (TIGR03866; HMM-score: 25.5)
    40-residue YVTN family beta-propeller repeat (TIGR02276; HMM-score: 14.4)
  • TheSEED:
  • PFAM:
    Beta_propeller (CL0186) Lactonase; Lactonase, 7-bladed beta-propeller (PF10282; HMM-score: 356)
    SBP56; 56kDa selenium binding protein (SBP56) (PF05694; HMM-score: 17.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.116
    • Ymax_pos: 11
    • Cmax: 0.109
    • Cmax_pos: 54
    • Smax: 0.182
    • Smax_pos: 1
    • Smean: 0.124
    • D: 0.119
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446103467 NCBI
  • RefSeq: WP_000181322 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MTNGYIGSYTKKNGKGIYRFELNENQSRIDLLETGFELEASTYLVRNNEVLYGINKEGEQCGVASLKIDDNGELHLLNKCLSSKAGTGCYVSISEDKRYLFEAVYGAGIIRMYELNTHTGEIIRLIQELAHDFPTGTHERQDHPHAHYINQTPDGKYVAVTDLGADRIVTYKFDDNGFEFYKESLFKDSDGTRHIEFHDNGKFAYVVHELSNTVSVAEYNDGKFEELERHLTIPENFDGDTKLAAVRLSHDQQFLYVSNRGHDSIAIFKVLDNGQHLELVTITESGGQFPRDFNIASSDDLLVCAHEQGDSVVTVFERNKETGKITLCDNTRVASEGVCVIF

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS10375 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]