From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS11505 [old locus tag: SACOL2188 ]
  • pan locus tag?: SAUPAN005594000
  • symbol: SACOL_RS11505
  • pan gene symbol?: lacR
  • synonym:
  • product: DeoR/GlpR transcriptional regulator

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS11505 [old locus tag: SACOL2188 ]
  • symbol: SACOL_RS11505
  • product: DeoR/GlpR transcriptional regulator
  • replicon: chromosome
  • strand: -
  • coordinates: 2269241..2270032
  • length: 792
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_002951 (2269241..2270032) NCBI
  • BioCyc: G1G4B-2410 BioCyc
  • MicrobesOnline: see SACOL2188

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGACCCATCGCCTAAATAAAGGAGGCAATTTTACATTGAATAAACATGAACGTTTGGAC
    GAAATTGCTAAACTAGTGAATAAAAAGGGCACGATAAGAACGAATGAAATCGTCGAAGGT
    TTAAATGTGTCTGATATGACAGTTCGAAGAGATTTAATTGAATTGGAAAATAAAGGGATT
    TTAACGAAGATTCATGGTGGTGCACGCAGTAATTCAACATTTCAGTATAAAGAAATATCG
    CATAAAGAAAAACATACCCGTCAAATTGCAGAAAAACGATTTATAGCTAAAAAAGCTGCA
    TCATTAATTGAAGATGGGGATACTTTGTTTTTCGGACCAGGAACAACAGTGGAACTATTA
    GCAGAAGAAGTCAATCATCATACGCTCACAATTATTACGAATTGTTTGCCGGTGTATAAA
    ATTTTGTTAGAAAAACAAACAGCACATTTTCGTGTCTATTTAATTGGTGGTGAAATGCGC
    CATATTACAGAAGCATTTGTAGGTGAAATGGCGAACGCCATGTTGGAAAAACTAAGATTT
    AGCAAGATGTTCTTTAGTAGTAACGCAGTAAATAAAGGTGCTGTGATGACATCTACATTA
    GATGAAGCCTATACGCAACAACTGGCACTAAGTAATTCAATTGAAAAATACTTGTTAATC
    GATCATACGAAAGTTGGCAAAGAAGATTTTACATCATTTTGTCAGTTAAACGAATTGACT
    GCAGTGGTCATGGACTATGAAGATGAAGAAAAAGTAGAAACGATTAAAACATATATTGAA
    GTAGTCGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    792

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS11505 [old locus tag: SACOL2188 ]
  • symbol: SACOL_RS11505
  • description: DeoR/GlpR transcriptional regulator
  • length: 263
  • theoretical pI: 6.68378
  • theoretical MW: 29888.1
  • GRAVY: -0.319772

Function[edit | edit source]

  • TIGRFAM:
    Signal transduction Regulatory functions DNA interactions CRISPR locus-related DNA-binding protein (TIGR01884; HMM-score: 24.6)
    and 5 more
    Metabolism Energy metabolism Amino acids and amines histidine utilization repressor (TIGR02018; HMM-score: 15.7)
    Signal transduction Regulatory functions DNA interactions histidine utilization repressor (TIGR02018; HMM-score: 15.7)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other iron-sulfur cluster biosynthesis transcriptional regulator SufR (TIGR02702; HMM-score: 14.6)
    Signal transduction Regulatory functions DNA interactions iron-sulfur cluster biosynthesis transcriptional regulator SufR (TIGR02702; HMM-score: 14.6)
    Signal transduction Regulatory functions DNA interactions staphylococcal accessory regulator family (TIGR01889; HMM-score: 12.1)
  • TheSEED: see SACOL2188
  • PFAM:
    ISOCOT_Fold (CL0246) DeoRC; DeoR C terminal sensor domain (PF00455; HMM-score: 162.1)
    and 10 more
    HTH (CL0123) HTH_DeoR; DeoR-like helix-turn-helix domain (PF08220; HMM-score: 81)
    HTH_11; HTH domain (PF08279; HMM-score: 27.4)
    GntR; Bacterial regulatory proteins, gntR family (PF00392; HMM-score: 21.2)
    FaeA; FaeA-like protein (PF04703; HMM-score: 17.5)
    TrmB; Sugar-specific transcriptional regulator TrmB (PF01978; HMM-score: 16.1)
    Fe_dep_repress; Iron dependent repressor, N-terminal DNA binding domain (PF01325; HMM-score: 15.1)
    Penicillinase_R; Penicillinase repressor (PF03965; HMM-score: 13.8)
    PaaX; PaaX-like protein (PF07848; HMM-score: 13.1)
    ISOCOT_Fold (CL0246) CoA_trans; Coenzyme A transferase (PF01144; HMM-score: 12.6)
    HTH (CL0123) Rrf2; Transcriptional regulator (PF02082; HMM-score: 12.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • genes regulated by LacR, TF important in Lactose utilization: in N315

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.031751
    • TAT(Tat/SPI): 0.000485
    • LIPO(Sec/SPII): 0.000351
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MTHRLNKGGNFTLNKHERLDEIAKLVNKKGTIRTNEIVEGLNVSDMTVRRDLIELENKGILTKIHGGARSNSTFQYKEISHKEKHTRQIAEKRFIAKKAASLIEDGDTLFFGPGTTVELLAEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMRHITEAFVGEMANAMLEKLRFSKMFFSSNAVNKGAVMTSTLDEAYTQQLALSNSIEKYLLIDHTKVGKEDFTSFCQLNELTAVVMDYEDEEKVETIKTYIEVVD

Experimental data[edit | edit source]

  • experimentally validated: see SACOL2188
  • protein localization: see SACOL2188
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]