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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS12280 [old locus tag: SACOL2338 ]
  • pan locus tag?: SAUPAN005837000
  • symbol: SACOL_RS12280
  • pan gene symbol?:
  • synonym:
  • product: DUF805 domain-containing protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS12280 [old locus tag: SACOL2338 ]
  • symbol: SACOL_RS12280
  • product: DUF805 domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2397788..2398435
  • length: 648
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (2397788..2398435) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
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    301
    361
    421
    481
    541
    601
    ATGGAACAATTACCTCAAGTAGGTTTTATGAAATCATTCGTTTTATTTTGGAAAAATTAT
    GTAAATTTTAAGGGGAGATCAAGACGTAGTGAATATTGGTATATGGCACTATGGCATTTG
    ATACTTATGGTTCCAGCTGTGTGTGTGCTAATAATAAACCTATTTCTATTCTTTATTTCT
    ATAGCGGCGGATAACGAAACATTAATAGTTATGAGTATATTGATGATTATCCTTACATCT
    GTGTATACTTTTGTCTATAGTTTGGCAACGTTTATTCCAAATTTAGCGTTGTGCGTTCGA
    AGATTTCACGATATATCAAGAACAATGTTATTTCCAATGATTATGACAGTATTCAGTATT
    ATATTTTATATAGTATTACAGATTATCGATAGTTATTATGACAGTGATTTTACATTAATG
    CCGATGGGTCTTAATATTTTGTTAGTACTTCTTTATTTTGTTTATTTAGGCCTAACAATT
    GTTATGATAGTATTCCTATGCTTTGACAGTAAGCCGGCAAATAAATATGGCGAAAGCCCA
    AAATACCCGTCTACAATTAAAAATCAACCAGTGACATCTGAAACACCGGAAAAAGCGTGT
    ACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    648

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS12280 [old locus tag: SACOL2338 ]
  • symbol: SACOL_RS12280
  • description: DUF805 domain-containing protein
  • length: 215
  • theoretical pI: 6.50253
  • theoretical MW: 24956.6
  • GRAVY: 0.573023

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    non-ribosomal peptide synthetase terminal domain of unknown function (TIGR02353; HMM-score: 4.8)
  • TheSEED:
  • PFAM:
    no clan definedDUF805; Protein of unknown function (DUF805) (PF05656; HMM-score: 67.3)
    OAD_gamma; Oxaloacetate decarboxylase, gamma chain (PF04277; HMM-score: 10.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.131
    • Ymax_pos: 63
    • Cmax: 0.161
    • Cmax_pos: 63
    • Smax: 0.169
    • Smax_pos: 58
    • Smean: 0.078
    • D: 0.11
  • predicted transmembrane helices (TMHMM): 4

Accession numbers[edit source | edit]

  • GI: 446358963 NCBI
  • RefSeq: WP_000436818 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MEQLPQVGFMKSFVLFWKNYVNFKGRSRRSEYWYMALWHLILMVPAVCVLIINLFLFFISIAADNETLIVMSILMIILTSVYTFVYSLATFIPNLALCVRRFHDISRTMLFPMIMTVFSIIFYIVLQIIDSYYDSDFTLMPMGLNILLVLLYFVYLGLTIVMIVFLCFDSKPANKYGESPKYPSTIKNQPVTSETPEKACTSETPKTPEETDNQL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS12280 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]