NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS13380 [old locus tag: SACOL2555 ]
- pan locus tag?: SAUPAN006199000
- symbol: SACOL_RS13380
- pan gene symbol?: cidR
- synonym:
- product: LysR family transcriptional regulator
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SACOL_RS13380 [old locus tag: SACOL2555 ]
- symbol: SACOL_RS13380
- product: LysR family transcriptional regulator
- replicon: chromosome
- strand: -
- coordinates: 2614414..2615277
- length: 864
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_002951 (2614414..2615277) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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841ATGAAATATTTTATTGAAGTCGTTAAGCAAGGAGGCATGACTAATGCTTCCAAATCATTA
TATATTGCACAACCTACAATTAGTAAAGCAATTAAAGATATTGAAAATGAAATGGGCACG
CCCTTATTTGATAGAAGTAAAAGACATTTAATTCTTACCGATGCAGGTCAAATTTTTTAT
GAGAAAAGTAAAGAAATTGTTGCACTGTATGATTATTTACCATCTGAAATGGAACGCTTG
AATGGACTGGAAACAGGACATATAAACATGGGCATGTCGGCAGTCATGAATATGAAGATT
CTTATCAATATTCTTGGTGCATTCCATCAACAATATCCAAATGTTACATATAATTTGATA
GAAAATGGCGGTAAAACAATTGAACAGCAAATTATCAATGATGAAGTAGATATAGGCGTG
ACCACTTTGCCAGTCGATCATCATATTTTCGATTATACTACCCTAGATAAGGAAGATTTG
CGACTTATCGTGAGCAGAGAGCATCGACTCGCAAAATATGAAACTGTTAAACTCGAAGAT
TTAGCAGGTGAAGACTTCATTTTATTTAATAAAGACTTTTACTTGAATGATAAAATTATT
GAAAATGCTAAAAACGTTGGCTTTGTTCCGAATACTGTAGCGCAAATTTCACAATGGCAT
GTTATAGAAGATTTAGTTACGAATGAATTAGGTATTAGTATTTTACCAACATCAATTTCA
GAGCAACTAAATGGAGATGTGAAGCTGCTACGCATTGAAGATGCTCATGTACATTGGGAA
TTAGGTGTTGTTTGGAAGAAGGATAAACAATTAAGTCATGCCACAACGAAATGGATAGAA
TTTTTGAAAGACCGTTTAGGCTAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SACOL_RS13380 [old locus tag: SACOL2555 ]
- symbol: SACOL_RS13380
- description: LysR family transcriptional regulator
- length: 287
- theoretical pI: 5.22208
- theoretical MW: 32846.4
- GRAVY: -0.225784
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Regulatory functionsDNA interactionsaminoethylphosphonate catabolism associated LysR family transcriptional regulator (TIGR03339; HMM-score: 131.4)Energy metabolismOtherpca operon transcription factor PcaQ (TIGR02424; HMM-score: 82.9)Regulatory functionsDNA interactionspca operon transcription factor PcaQ (TIGR02424; HMM-score: 82.9)putative choline sulfate-utilization transcription factor (TIGR03418; HMM-score: 53.7)Cellular processesToxin production and resistancetranscriptional regulator, ArgP family (TIGR03298; HMM-score: 41.3)DNA metabolismDNA replication, recombination, and repairtranscriptional regulator, ArgP family (TIGR03298; HMM-score: 41.3)Regulatory functionsDNA interactionstranscriptional regulator, ArgP family (TIGR03298; HMM-score: 41.3)Regulatory functionsDNA interactionsD-serine deaminase transcriptional activator (TIGR02036; HMM-score: 33.9)Fatty acid and phospholipid metabolismBiosynthesispoly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit (TIGR01836; HMM-score: 15.1)
- TheSEED:
- PFAM: PBP (CL0177) LysR_substrate; LysR substrate binding domain (PF03466; HMM-score: 143.8)HTH (CL0123) HTH_1; Bacterial regulatory helix-turn-helix protein, lysR family (PF00126; HMM-score: 64.4)no clan definedERp29; Endoplasmic reticulum protein ERp29, C-terminal domain (PF07749; HMM-score: 13.1)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.197
- Ymax_pos: 31
- Cmax: 0.258
- Cmax_pos: 31
- Smax: 0.209
- Smax_pos: 29
- Smean: 0.143
- D: 0.176
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
- GI:
- RefSeq: WP_001549809 NCBI
- UniProt:
⊟Protein sequence[edit source | edit]
- MKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDAGQIFYEKSKEIVALYDYLPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQYPNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAKYETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGISILPTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SACOL_RS13380 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]