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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS13540 [old locus tag: SACOL2585 ]
  • pan locus tag?: SAUPAN006236000
  • symbol: SACOL_RS13540
  • pan gene symbol?:
  • synonym:
  • product: PTS transporter subunit IIC

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS13540 [old locus tag: SACOL2585 ]
  • symbol: SACOL_RS13540
  • product: PTS transporter subunit IIC
  • replicon: chromosome
  • strand: -
  • coordinates: 2650060..2651115
  • length: 1056
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (2650060..2651115) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGACATCAATTAAAACAATTACACCCAAAGATTTTATATTTAGAGTTTTATCAGGTGTC
    GCCATAGGTATTGTTGCGGGTTTAGTTCCTAATGCGATACTTGGAGAAATTTTTAAATAC
    TTTATGGATTATCATCCGATTTTTAAAACGTTATTAGGCGTTGTCGTTGCAATTCAATTT
    ACAGTACCTGCTTTGATTGGTGCATTGGTTGCCATGAAATTTGACCTATCGCCATTAGCA
    ATTGCTGTTGTGGCAAGTGCAGCATATGTAGGAAGCGGTGCAGCGCAGTTTAAAAATGGT
    GCTTGGATGATTACGGGTATTGGTGATTTAATTAATACAATGATTACAGCAGCGATTGCA
    GTGTTATTCATTTTACTTATTCAACATCGCGTAGGTAGTATGGCATTGATTGTATTCCCA
    ACAGTTGTTGGCGGTATTTCAGGTGCAATTGGTGTTTTAATATTGCCGTATACGAAAATG
    ATTACAACAGCCATCGGTAATATGGTTAATGGTTTTACAGAATTACAACCGATTGTCATG
    AGTATTTTGATTTCAATGGTATTTAGTCTTATTATTATTTCGCCACTATCAACTGTGGCC
    ATTGCCTTTGCGATAGGTATTACAGGTTTAGCAGCTGGATCAGCGTCAATTGGTATCTCC
    GCGACTGAAGCAGTATTGATAATTGGTACAAGTAAAGTGAATCGTTTAGGGGTGCCGTTA
    TCCGTCTTCTTTGGAGGCGTTAAAATGATGATACCTAATATGGTGAAATATCCAATTCTT
    ATGTTACCAATATTAACGACAGCCATTGTATCAGGTTTGGTATCAGCATTAGTAGGTATT
    CATGGAACGAAAGAGTCAGCTGGATTTGGTTTTATAGGAATGGTAGGACCGATTAATGCA
    TTTAAATTTATGGAGGTTGATTCTGCTTGGTTGAGTGTCTTACTAATTGTAGTAGCGTTC
    TTTGTTGTACCATTTGTAACAGCTTGGCTTGCAGATATCATTTATCGTAAAGTGTTTCGT
    TTATATACTAATGATATTTTTAAATTCATGGGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1056

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS13540 [old locus tag: SACOL2585 ]
  • symbol: SACOL_RS13540
  • description: PTS transporter subunit IIC
  • length: 351
  • theoretical pI: 10.121
  • theoretical MW: 37016.6
  • GRAVY: 1.21225

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    PTS_EIIC (CL0493) PTS_EIIC_2; Phosphotransferase system, EIIC (PF13303; HMM-score: 314.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.16
    • Ymax_pos: 21
    • Cmax: 0.141
    • Cmax_pos: 36
    • Smax: 0.334
    • Smax_pos: 15
    • Smean: 0.226
    • D: 0.186
  • predicted transmembrane helices (TMHMM): 10

Accession numbers[edit source | edit]

  • GI: 446122829 NCBI
  • RefSeq: WP_000200684 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MTSIKTITPKDFIFRVLSGVAIGIVAGLVPNAILGEIFKYFMDYHPIFKTLLGVVVAIQFTVPALIGALVAMKFDLSPLAIAVVASAAYVGSGAAQFKNGAWMITGIGDLINTMITAAIAVLFILLIQHRVGSMALIVFPTVVGGISGAIGVLILPYTKMITTAIGNMVNGFTELQPIVMSILISMVFSLIIISPLSTVAIAFAIGITGLAAGSASIGISATEAVLIIGTSKVNRLGVPLSVFFGGVKMMIPNMVKYPILMLPILTTAIVSGLVSALVGIHGTKESAGFGFIGMVGPINAFKFMEVDSAWLSVLLIVVAFFVVPFVTAWLADIIYRKVFRLYTNDIFKFMG

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS13540 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]