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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS13940 [old locus tag: SACOL2661 ]
  • pan locus tag?: SAUPAN006370000
  • symbol: SACOL_RS13940
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS13940 [old locus tag: SACOL2661 ]
  • symbol: SACOL_RS13940
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2723588..2724046
  • length: 459
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (2723588..2724046) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    TTGAAAAAACTTCTTATTACCATCGTAATTATCGTATTAATCGGAGCACTTGGGTTCGCA
    ATTTATGCTGCAATAAATCATTCTACATCATCAAGTAATAACCAAGAACAAGAAAATAAA
    TCTACGCATAAAAAGACAGAAACCGAAGAAAATGATCAACAAGATGATAGTGCAGACAAA
    ACAGATAAAAATCAAAATAATGGCAATAACGTTACTAATGACAATCAACCATCTTCACCG
    TCAAATGTTCCTAACAACCATTCAACAGTACCATCGAATACGCAACCAGCTCAGCCAAAA
    GACTCAAATTCAAATAAAAATAATACTCACGGTGGTGGCAGTCAATCGTCAACAAACAAC
    CAAAATAATCAACAACAGAACACACCACCTGCTAATAAATCAAATAATACCAATACGCCT
    TCTAAACAAACACCTCAAGCACAATCACCTAAAAATTAA
    60
    120
    180
    240
    300
    360
    420
    459

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS13940 [old locus tag: SACOL2661 ]
  • symbol: SACOL_RS13940
  • description: hypothetical protein
  • length: 152
  • theoretical pI: 7.85378
  • theoretical MW: 16361.2
  • GRAVY: -1.46579

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cellular processesCellular processesCell divisioncell division protein ZipA (TIGR02205; HMM-score: 21.3)
    MetabolismTransport and binding proteinsCations and iron carrying compoundscation transporter family protein (TIGR00860; HMM-score: 15.5)
    Cellular processesCellular processesSporulation and germinationstage III sporulation protein AG (TIGR02830; HMM-score: 15.5)
    heavy metal sensor kinase (TIGR01386; EC 2.7.13.3; HMM-score: 13.4)
    MetabolismEnergy metabolismElectron transportsulfocyanin (TIGR03094; HMM-score: 13)
    Genetic information processingMobile and extrachromosomal element functionsPlasmid functionsentry exclusion protein TrbK (TIGR04361; HMM-score: 11.9)
    mycoides cluster lipoprotein, LppA/P72 family (TIGR03490; HMM-score: 11.7)
    Cellular processesCellular processesPathogenesisputative immunoglobulin-blocking virulence protein (TIGR04526; HMM-score: 8.8)
    two transmembrane protein (TIGR04527; HMM-score: 8.3)
    MetabolismTransport and binding proteinsCations and iron carrying compoundspotassium uptake protein, Trk family (TIGR00934; HMM-score: 5.8)
    MetabolismTransport and binding proteinsNucleosides, purines and pyrimidinesnucleoside Transporter (TIGR00939; HMM-score: 5.4)
  • TheSEED:
  • PFAM:
    no clan definedDUF4083; Domain of unknown function (DUF4083) (PF13314; HMM-score: 18.5)
    DUF1510; Protein of unknown function (DUF1510) (PF07423; HMM-score: 18)
    SpoIIIAH; SpoIIIAH-like protein (PF12685; HMM-score: 16.4)
    DUF5469; Family of unknown function (DUF5469) (PF17561; HMM-score: 16.4)
    SARAF; SOCE-associated regulatory factor of calcium homoeostasis (PF06682; HMM-score: 15.4)
    CytochromB561_N; Cytochrome B561, N terminal (PF09786; HMM-score: 14.6)
    Tetraspannin (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 14.3)
    O-anti_assembly (CL0499) O-antigen_lig; O-antigen ligase like membrane protein (PF13425; HMM-score: 13.3)
    no clan definedTMEM51; Transmembrane protein 51 (PF15345; HMM-score: 13.3)
    DUF2206; Predicted membrane protein (DUF2206) (PF09971; HMM-score: 13.2)
    DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 12.9)
    UPF0767; UPF0767 family (PF15990; HMM-score: 12.7)
    DUF4199; Protein of unknown function (DUF4199) (PF13858; HMM-score: 12.4)
    Ac76; Orf76 (Ac76) (PF05814; HMM-score: 12.2)
    P12; Virus attachment protein p12 family (PF12669; HMM-score: 12)
    PsaL; Photosystem I reaction centre subunit XI (PF02605; HMM-score: 11.5)
    ABC-2 (CL0181) ABC2_membrane_2; ABC-2 family transporter protein (PF12679; HMM-score: 10.9)
    DMT (CL0184) TMEM144; Transmembrane family, TMEM144 of transporters (PF07857; HMM-score: 10.8)
    no clan definedSLC12; Solute carrier family 12 (PF03522; HMM-score: 10.7)
    Transporter (CL0375) Connexin; Connexin (PF00029; HMM-score: 9.8)
    GPCR_A (CL0192) SID-1_RNA_chan; dsRNA-gated channel SID-1 (PF13965; HMM-score: 8.2)
    Cyclin (CL0065) CDK5_activator; Cyclin-dependent kinase 5 activator protein (PF03261; HMM-score: 7.9)
    OB (CL0021) tRNA_anti-like; tRNA_anti-like (PF12869; HMM-score: 7.9)
    no clan definedFAM176; FAM176 family (PF14851; HMM-score: 6.9)
    Tetraspannin (CL0347) Tetraspannin; Tetraspanin family (PF00335; HMM-score: 6.8)
    no clan definedMMM1; Maintenance of mitochondrial morphology protein 1 (PF10296; HMM-score: 5.8)
    FAM70; FAM70 protein (PF14967; HMM-score: 5.7)
    TipE; Na+ channel auxiliary subunit TipE (PF16972; HMM-score: 5.1)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.05
    • Cellwall Score: 0.82
    • Extracellular Score: 9.13
    • Internal Helix: 1
  • LocateP:
  • SignalP: Signal peptide length 33 aa
    • Ymax: 0.411
    • Ymax_pos: 33
    • Cmax: 0.248
    • Cmax_pos: 33
    • Smax: 0.862
    • Smax_pos: 19
    • Smean: 0.727
    • D: 0.535
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

  • GI: 446657457 NCBI
  • RefSeq: WP_000734803 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MKKLLITIVIIVLIGALGFAIYAAINHSTSSSNNQEQENKSTHKKTETEENDQQDDSADKTDKNQNNGNNVTNDNQPSSPSNVPNNHSTVPSNTQPAQPKDSNSNKNNTHGGGSQSSTNNQNNQQQNTPPANKSNNTNTPSKQTPQAQSPKN

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS13940 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]