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NCBI: 03-AUG-2016

Summary[edit source | edit]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_01048
  • pan locus tag?: SAUPAN003325000
  • symbol: SAOUHSC_01048
  • pan gene symbol?: potC
  • synonym:
  • product: spermidine/putrescine ABC transporter permease

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAOUHSC_01048
  • symbol: SAOUHSC_01048
  • product: spermidine/putrescine ABC transporter permease
  • replicon: chromosome
  • strand: +
  • coordinates: 1016322..1017131
  • length: 810
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAAATGGTATGGAAAGCTGTATATCGGGATACTTTTAGCGATTTTATACATCCCAATA
    TTCTTTTTAATGTTCTATTCATTCAATTCGGCTGGTAATATGATTCACTTTGAACATTTT
    ACATTAGAGCATTATCAATCATTATTTCAAAATGATCATTTAATGTCGGTCATTTTTAAT
    ACGATAGCTGTAGCACTTTTAGCAGCCTCAATTTCTACAGTTATTGGTACATTTGGTGCC
    ATTGCTATTTATTATTTAAGAAATAAAAAGTTTAAAGTAACTTTACTAACATTGAATAAT
    GTCTTGATGGTATCATCCGACGTTGTCATAGGTGCATCATTCTTAATTATGTTTACAACG
    ATTGGCCATTTTACTGGTCTTGGTTTAGGATTTTGGACAGTTCTAATATCTCATATTGCA
    TTTTGCATACCTATAGTTGTGATTATCGTCTTACCACAACTGTATGAAATGAATAATAAT
    ATGTTAAATGCTGCAAGAGATTTAGGAGCGACTGAACCACAATTATTAAGCAACATTATT
    ATTCCTAATATTTTACCTTCTATTATAGGAGGATTCTTTATGGCTTTAACTTATTCACTA
    GACGATTTCACAGTAAGTTTCTTCGTTACTGGTAATGGCTTTAGTGTGTTATCAGTTGAA
    GTTTATGCTATGGCGAGAAAAGGAATTAGTATGGAAATTAATGCGATTTCAACATTATTG
    TTTGCTGTTATTGTATTAGGAATACTAGGATATTATTTGATTCAATACGTGATAAATAAG
    AAAAAACTAATCAAGCGAGGTGTAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    810

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAOUHSC_01048
  • symbol: SAOUHSC_01048
  • description: spermidine/putrescine ABC transporter permease
  • length: 269
  • theoretical pI: 9.33859
  • theoretical MW: 30002.7
  • GRAVY: 0.904089

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsAnionsmolybdate ABC transporter, permease protein (TIGR02141; HMM-score: 53.1)
    MetabolismTransport and binding proteinsAmino acids, peptides and aminesputative 2-aminoethylphosphonate ABC transporter, permease protein (TIGR03262; HMM-score: 48.2)
    2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 45.8)
    2-aminoethylphosphonate ABC transport system, membrane component PhnV (TIGR03255; HMM-score: 44.8)
    MetabolismTransport and binding proteinsAnionssulfate ABC transporter, permease protein (TIGR00969; HMM-score: 43.6)
    MetabolismTransport and binding proteinsAnionssulfate ABC transporter, permease protein CysT (TIGR02139; HMM-score: 38.8)
    NifC-like ABC-type porter (TIGR01581; HMM-score: 31.4)
    choline ABC transporter, permease protein (TIGR03416; HMM-score: 30.5)
    MetabolismTransport and binding proteinsAnionsphosphate ABC transporter, permease protein PstA (TIGR00974; HMM-score: 27.8)
    MetabolismTransport and binding proteinsAnionsphosphate ABC transporter, permease protein PstC (TIGR02138; HMM-score: 26.1)
    MetabolismTransport and binding proteinsAnionssulfate ABC transporter, permease protein CysW (TIGR02140; HMM-score: 25.2)
  • TheSEED:  
    Polyamine Metabolism Spermidine/putrescine import ABC transporter permease protein PotC (TC 3.A.1.11.1) 
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 64.5)
    no clan definedDUF4293; Domain of unknown function (DUF4293) (PF14126; HMM-score: 8.6)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 7
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.125
    • Ymax_pos: 32
    • Cmax: 0.17
    • Cmax_pos: 32
    • Smax: 0.19
    • Smax_pos: 29
    • Smean: 0.085
    • D: 0.109
  • predicted transmembrane helices (TMHMM): 6

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKWYGKLYIGILLAILYIPIFFLMFYSFNSAGNMIHFEHFTLEHYQSLFQNDHLMSVIFNTIAVALLAASISTVIGTFGAIAIYYLRNKKFKVTLLTLNNVLMVSSDVVIGASFLIMFTTIGHFTGLGLGFWTVLISHIAFCIPIVVIIVLPQLYEMNNNMLNAARDLGATEPQLLSNIIIPNILPSIIGGFFMALTYSLDDFTVSFFVTGNGFSVLSVEVYAMARKGISMEINAISTLLFAVIVLGILGYYLIQYVINKKKLIKRGVK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet.: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

Relevant publications[edit source | edit]