Jump to navigation
Jump to search
NCBI: 03-AUG-2016
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus NCTC8325
- locus tag: SAOUHSC_01547
- pan locus tag?: SAUPAN001631000
- symbol: SAOUHSC_01547
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAOUHSC_01547
- symbol: SAOUHSC_01547
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1491472..1493469
- length: 1998
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 3920590 NCBI
- RefSeq: YP_500063 NCBI
- BioCyc: G1I0R-1437 BioCyc
- MicrobesOnline: 1289977 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981ATGTTAGACAAAGTCACTCAAATAGAAACAATTAAATATGATCGTGATGTCTCATATTCT
TATGCTGCTAGTCGTTTATCTACACATTGGACTAATCACAATATGGCTTGGTCTGACTTT
ATGCAGAAGCTAGCACAAACAGTTAGAACTAAAGAAGATTTAACTGAGTACAATAAAATG
TCTAAGTCTGAACAAGCCGATATAAAAGATGTTGGCGGATTTGTCGGTGGATATTTAAAA
GAAGGCAAACGGCGTGCTGGTCAAGTCATGAATCGTTCAATGCTAACACTTGATATCGAT
TATGCAGCCCAAGATATGACTGACATATTATCTATGTTTTATGATTTTGCATATTGTTTA
TATTCAACACATAAGCATAGAGAGATAAGTCCAAGACTGCGTTTAGTGATTCCTTTAAAA
CGAAATGTAAATGCAGATGAGTATGAAGCTATTGGGCGTAAAGTCGCAGATATCGTTGGC
ATGGATTACTTCGATGATACAACTTATCAACCACATAGGTTAATGTATTGGCCTTCAACT
AGTAACGATGCGGAATTTTTCTTTACCTATGAAGATTTACCTTTGTTAGACCCAGATAAA
ATATTAAATGAATATGTTGATTGGACTGACACATTAGAATGGCCAACGTCTTCAAGGGAA
GAGAGTAAGACTAAAAGATTAGCAGATAAGCAAGGCGACCCAGAAGAAAAGCCGGGAATT
GTTGGTGCATTTTGTAGAGCCTATACGATAGAAGAAGCTATAGAAACTTTTATTCCTGAT
TTATACGAAAAACATTCTACTAACCGTTATACCTATCATGAAGGTTCAACTGCAGGTGGA
TTGGTGTTATACGAAAATAACAAGTTTGCCTATTCTCATCATAATACGGATCCCGTAAGC
GGTATGCTTGTGAACAGTTTTGATTTAGTACGCATACACTTATATGGTGCTCAAGATGAA
GAAACTAAAACAGATACTCCGGTTAATCGACTACCTAGTTATAAAGCAATGCAGCAAAGA
GCGCAAAATGATGAGGTTGTTAAAAAGCAATTAATTAATGACAAAATGTCTGATGCAATG
CAGGATTTCGATGAAATAGAAAATAGCGATGATGCATGGTCTGAGACGTTAGAAATTACT
TCGAAAGGTACTTTCAAAGCTAGTATCCCAAATATAGAAATTATATTGCGTAATGATCCA
AATTTAAAAGGAAAAATAGCCTTTAACGAATTTACGAAACAAATTGAATGTTTAGGGAAA
GTGCCATGGAATACTAATTTTAAGACACGTCAATGGCAAGACGGTGATGATAGCAGTTTA
AGAAGTTATATCGAAAAGATTTATGACATACACCATTCAGGTAAAACAAAAGATGCCATT
ATAAGCGTAGCAATGCAAAATGCTTATCATCCAGTAAGGGATTATCTAAATAAAATATCG
TGGGATGGACATAAACGCCTTGAAAAGTTATTTATCAAATACTTAGGTGTTGAAGACACT
GAAGTGAATAGAACAACTACCAAAAAAGCATTGACTGCTGGAATCGCTAGAGTAATGGAG
CCTGGATGTAAATTTGACTATATGCTTACACTTTATGGTCCTCAAGGTGTAGGTAAATCT
GCTTTGCTAAAAAAATTAGGTGGTGCATGGTTTTCTGACAGTTTAGTTTCTGTTACAGGT
AAAGAAGCTTATGAGGCCTTACAAGGCGTTTGGCTAATGGAAATGGCAGAACTTGCAGCT
ACAAGAAAAGCTGAAGTTGAAGCTATTAAGCATTTCATATCTAAACAAGTTGACCGATTT
CGTGTTGCTTATGGGCATTATATTGAAGATTTTCCAAGGCAATGTATTTTCATTGGTACA
ACTAATAAAGTTGATTTCTTAAGAGATGAAACTGGTGGAAGACGTTTTTGGCCAATGACT
GTAAATCCAGAGAGAGTTGAAGTGAACTGGTCTAAACTAACCAAAGATGAGATTGACCAA
ATTTGGGCAGAAGGCTAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1080
1140
1200
1260
1320
1380
1440
1500
1560
1620
1680
1740
1800
1860
1920
1980
1998
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAOUHSC_01547
- symbol: SAOUHSC_01547
- description: hypothetical protein
- length: 665
- theoretical pI: 5.47579
- theoretical MW: 76679.9
- GRAVY: -0.609624
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- DNA primase, phage associated
- PFAM: P-loop_NTPase (CL0023) VirE; Virulence-associated protein E (PF05272; HMM-score: 284.8)and 7 moreAAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 19.9)AAA_16; AAA ATPase domain (PF13191; HMM-score: 15.9)ATPase_2; ATPase domain predominantly from Archaea (PF01637; HMM-score: 13.3)AAA_22; AAA domain (PF13401; HMM-score: 13.2)NACHT; NACHT domain (PF05729; HMM-score: 12.4)RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 12.2)RNA_helicase; RNA helicase (PF00910; HMM-score: 10.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008378
- TAT(Tat/SPI): 0.000568
- LIPO(Sec/SPII): 0.001242
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MLDKVTQIETIKYDRDVSYSYAASRLSTHWTNHNMAWSDFMQKLAQTVRTKEDLTEYNKMSKSEQADIKDVGGFVGGYLKEGKRRAGQVMNRSMLTLDIDYAAQDMTDILSMFYDFAYCLYSTHKHREISPRLRLVIPLKRNVNADEYEAIGRKVADIVGMDYFDDTTYQPHRLMYWPSTSNDAEFFFTYEDLPLLDPDKILNEYVDWTDTLEWPTSSREESKTKRLADKQGDPEEKPGIVGAFCRAYTIEEAIETFIPDLYEKHSTNRYTYHEGSTAGGLVLYENNKFAYSHHNTDPVSGMLVNSFDLVRIHLYGAQDEETKTDTPVNRLPSYKAMQQRAQNDEVVKKQLINDKMSDAMQDFDEIENSDDAWSETLEITSKGTFKASIPNIEIILRNDPNLKGKIAFNEFTKQIECLGKVPWNTNFKTRQWQDGDDSSLRSYIEKIYDIHHSGKTKDAIISVAMQNAYHPVRDYLNKISWDGHKRLEKLFIKYLGVEDTEVNRTTTKKALTAGIARVMEPGCKFDYMLTLYGPQGVGKSALLKKLGGAWFSDSLVSVTGKEAYEALQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGTTNKVDFLRDETGGRRFWPMTVNPERVEVNWSKLTKDEIDQIWAEG
⊟Experimental data[edit | edit source]
- experimentally validated: PeptideAtlas [1] [2]
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: [3] Multi-gene expression profiles
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Maren Depke, Stephan Michalik, Alexander Rabe, Kristin Surmann, Lars Brinkmann, Nico Jehmlich, Jörg Bernhardt, Michael Hecker, Bernd Wollscheid, Zhi Sun, Robert L Moritz, Uwe Völker, Frank Schmidt
A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies.
Proteomics: 2015, 15(21);3648-61
[PubMed:26224020] [WorldCat.org] [DOI] (I p) - ↑ Stephan Michalik, Maren Depke, Annette Murr, Manuela Gesell Salazar, Ulrike Kusebauch, Zhi Sun, Tanja C Meyer, Kristin Surmann, Henrike Pförtner, Petra Hildebrandt, Stefan Weiss, Laura Marcela Palma Medina, Melanie Gutjahr, Elke Hammer, Dörte Becher, Thomas Pribyl, Sven Hammerschmidt, Eric W Deutsch, Samuel L Bader, Michael Hecker, Robert L Moritz, Ulrike Mäder, Uwe Völker, Frank Schmidt
A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions.
Sci Rep: 2017, 7(1);9718
[PubMed:28887440] [WorldCat.org] [DOI] (I e) - ↑ Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
PLoS Genet: 2016, 12(4);e1005962
[PubMed:27035918] [WorldCat.org] [DOI] (I e)