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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 03-AUG-2016

Summary[edit source | edit]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_01905
  • pan locus tag?: SAUPAN004486000
  • symbol: SAOUHSC_01905
  • pan gene symbol?:
  • synonym:
  • product:

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: pseudogene
  • locus tag: SAOUHSC_01905
  • symbol: SAOUHSC_01905
  • product:
  • replicon: chromosome
  • strand: +
  • coordinates: 1813964..1815217
  • length: 1254
  • essential: no DEG

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGATGTTAAAAATCATCTTATATGCATATACTCAATCTGTATTTTCTGGTCGAAGAATA
    GAGAAATTACTTCATGACAGTATTCGAATGATGTGGTTAGCTCAAAATCAAACACCTTCT
    TATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTA
    TTTATTCAGTTCCATAGTCAATGTTTAAAGCAAAATCTTATTGATAATAATTCAATTTTT
    ATTGATGGTACAAAAGTAGAAGCTAATGCCAATAGATATACATTTGTGTGGAAGAAAAGT
    ATTCAAAATCACGAATCGAAATTGAACGAAAATTCAAAAGCATTATATCGTGACTTAGTT
    GAAGAAAAAATAATACCAGAGATAAAAGAAGATGGAGATAGCGATTTAACAATAGAAGAA
    ATAGATTTAATTGGTAGTCATTTAGATAAAGAAATCGAAGATTTAAATCATTCTATTGAG
    AACGAAGATTGTGCTCAAATTAGAAAACAGACCCGTAAAAAAAGAACTGAGATTAAGAAG
    TTCAAAAAGAAATTTGATGATTATTCCGAAAGAAAAAATAAATATGAAGAACAAAAATCG
    ATTCTTAAAGATAGAAATAGTTTTTCTAAAACTGATCATGATGCAACTTTTATGAGAATG
    AAGGAAGACCATATGAAAAATGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACA
    AATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAACCCGACAGATACTAGAACTTTA
    ATTCCATTTTTAACAATGATTCAAAATACCTTCGGTTATTTGTAGCTGATGCAGGTTATG
    GTAGTGAGCAAAACTATATGGCCATTATAGATGATTTTAATAAAACGCCACTTATTACGT
    ATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGACATTTTCGACACTCAAA
    ATTGGAAATATGACGAACTTAATGATGAATTTATATGTCCTAATAACAAAAGAATAGGTT
    TTAAAAGATATGCATACCGTAATGATAGATATGGTTTTAAACGAGACTTCAAACTATATG
    AATGCGATGACTGTTCAGCATGTTCTTTGAGGCAACAATGCATGAAACCAAATTCAAAAT
    CCAATAAGAAAATCATGAAGAATTATAATTGGGAATACTTTAAAGTCCAAATTAATCAAA
    AGCTTTCTGAACCAGAAACGAAAAAAATCTATAGTCAAAGAAAAATTGATGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1254

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAOUHSC_01905
  • symbol: SAOUHSC_01905
  • description:
  • length: 0
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    IS1272-like transposase, degenerate 
  • PFAM:

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb:
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP:
  • predicted transmembrane helices (TMHMM):

Accession numbers[edit source | edit]

  • GI:
  • RefSeq:
  • UniProt: Q2FXE4 UniProt

Protein sequence[edit source | edit]

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet.: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

Relevant publications[edit source | edit]