From AureoWiki
Jump to: navigation, search
Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN000080000
  • symbol?: tnp
  • description?: transposase for IS431mec

      descriptions from strain specific annotations:

    • transposase for IS431mec
    • transposase for IS-like element
    • Transposase for insertion sequence-like element IS431mec
    • IS1216 transposase
    • pseudogene
  • strand?: -
  • coordinates?: 88935..93674
  • synteny block?: BlockID0000660
  • occurrence?: in 31% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0036
    08BA02176:
    C248_0031
    11819-97:
    71193:
    ECT-R 2:
    ECTR2_36
    ED133:
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    SAA6008_00029
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR0034
    MSHR1132:
    MSSA476:
    Mu3:
    SAHV_0036 (tnp)
    Mu50:
    SAV0036 (tnp)
    MW2:
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    USA300_TCH1516:
    USA300HOU_0074
    VC40:

Genome Viewer[edit source | edit]

N315 chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues: