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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN000107000
  • symbol?:
  • description?: IS5/IS1182 family transposase

      descriptions from strain specific annotations:

    • IS5/IS1182 family transposase
    • IS1272 transposase
    • IS1272, transposase
    • ISSau3 transposase
    • putative transposase
    • transposase DDE domain protein
  • strand?: -
  • coordinates?: 125375..138638
  • synteny block?: BlockID0000850
  • occurrence?: in 28% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    MS7_0036
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    SAEMRSA15_00330
    JH1:
    JH9:
    JKD6008:
    JKD6159:
    SAA6159_00034
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    SAMSHR1132_00350
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    MW0034
    RF122:
    ST398:
    T0131:
    TCH60:
    HMPREF0772_10432
    TW20:
    USA300_TCH1516:
    USA300HOU_0034
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MMLKVILYAYTQSVFSGRKIEKMLNDSIRMMWLSQNQKPSYKTINQFRVNPKVDALLESL
    USA300_FPR3757  ----MILYAYTQSVFSGRKIEKMLNDSIRMMWLSQNQKPSYKTINQFRVNPKVDALLESL
                        :*******************************************************

    COL             FIQFYSQCVKQNLIDDKAIFIDGTKIEANANRYTFVWKKSIQNHESKMNEDSKALYHELV
    USA300_FPR3757  FIQFYSQCVKQNLIDDKAIFIDGTKIEANANRYTFVWKKSIQNHESKMNEDSKALYHELV
                    ************************************************************

    COL             TNKIIPEIKEDHDNELTKEEIDLIGSHLDKEIEDLNQHINNEKCTKTRKQIRLKRTKIKK
    USA300_FPR3757  TNKIIPEIKEDHDNELTKEEIDLIGSHLDKEIEDLNQHINNEKCTKTRKQIRLKRTKIKK
                    ************************************************************

    COL             YKKQINDYFERKYRYEFQKSILKDRNSYSKTDYDATFMRMKEDHMKNGQLKPGYNLQIAT
    USA300_FPR3757  YKKQINDYFERKYRYEFQKSILKDRNSYSKTDYDATFMRMKEDHMKNGQLKPGYNLQIAT
                    ************************************************************

    COL             NSQFVLSYNVYQNPTDTRTMIPFLNSIQETYGHLPEYIVADAGYGSESNYKAIIDDFNRT
    USA300_FPR3757  NSQFVLSYNVYQNPTDTRTMIPFLNSIQETYGHLPEYIVADAGYGSESNYKAIIDDFNRT
                    ************************************************************

    COL             PLITYGMFIKDKTKKYKSDIFNTQNWNYDEINDEFICPNNKRLGFKRYAYRHDKYGYKRD
    USA300_FPR3757  PLITYGMFIKDKTKKYKSDIFNTQNWNYDEINDEFICPNNKRLGFKRYAYRHDKYGYKRD
                    ************************************************************

    COL             FKLYECDDCSECPLKNQCMNFNSKTNKKIMKNYNWEYFKSQINKKLSEPETKNIYSQRKI
    USA300_FPR3757  FKLYECDDCSECPLKNQCMNFNSKTNKKIMKNYNWEYFKSQINKKLSEPETKNIYSQRKI
                    ************************************************************

    COL             DVEPVFGFMKAILGFTRMSVRGLNKVKRELGFVLMALNIRKVVAQRAENNQKIYKKDNFY
    USA300_FPR3757  DVEPVFGFMKAILGFTRMSVRGLNKVKRELGFVLMALNIRKVVAQRAENNQKIYKKDNFY
                    ************************************************************

    COL             IISIEIVFFHLSKNFMSRTHYDLFFYC
    USA300_FPR3757  IISIEIVFFHLSKNFMSRTHYDLFFYC
                    ***************************