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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

Summary[edit | edit source]

  • pan ID?: SAUPAN000126000
  • symbol?:
  • synonym:
  • description?: hypothetical protein
  • strand?: -
  • coordinates?: 151465..156864
  • synteny block?: BlockID0001000
  • occurrence?: in 52% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0058
    08BA02176:
    C248_0049
    11819-97:
    6850:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    JH1:
    SaurJH1_0045
    JH9:
    SaurJH9_0045
    JKD6008:
    SAA6008_00055
    JKD6159:
    SAA6159_00035
    LGA251:
    M013:
    M013TW_0059
    MRSA252:
    MSHR1132:
    SAMSHR1132_00360
    MSSA476:
    SAS0029
    Mu3:
    SAHV_0057
    Mu50:
    SAV0058
    MW2:
    RF122:
    ST398:
    T0131:
    SAT0131_00053
    TCH60:
    TW20:
    SATW20_00890
    USA300_TCH1516:
    USA300HOU_0035
    VC40:

Genome Viewer[edit | edit source]

COL
N315
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             ----MNTIKSTINTEAIFSDDEQHRYLLKKTWDEKKPACTVITMYPHLDGVLSLDLTTVL
    N315            MIIYMNTIKNTIYTEAIFSKDEKHRYLLKKTWDEKKPACTVITMYPHLDGVLSLDLTTVL
    USA300_FPR3757  ----MNTIKSTIHTEAIFSDDEQHRYLLKKTWDEKKAACTVITMYPHLDGVLSLDLTTVL
                        *****.** ******.**:*************.***********************

    COL             ILNQLANTEQYGAVYLVNLFSNIRTPENLKHIKNPYDEHTDIHLMKAISESDTVILAYGA
    N315            ILNQLANSERYGAVYLVNLFSNIKTPENLKHIKEPYDKHTDIHLMKAISESDTVILAYGA
    USA300_FPR3757  ILNQLANSERYGAVYLVNLFSNIRTPENLKHIKNPYDEHTDIHLMKAISESDTVILAYGA
                    *******:*:*************:*********:***:**********************

    COL             YAKRPVVIDRVEQVMEMLKPHKKKVKKLINPVTNEIMHPLNPKARQKWILKS
    N315            YAKRPVVVERVEQVMEMLKPHKKKVKKLINPATNEIMHPLNPKARQKWTLKA
    USA300_FPR3757  YAKRPVVIDRVEQVMEMLKPHKKKVKKLINPVTNEIMHPLNPKARQKWILKS
                    *******::**********************.**************** **: