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Summary[edit source | edit]

  • pan ID?: SAUPAN000858000
  • symbol?: plc
  • description?: 1-phosphatidylinositol phosphodiesterase precurosr

      descriptions from strain specific annotations:

    • 1-phosphatidylinositol phosphodiesterase precurosr
    • phosphatidylinositol diacylglycerol-lyase
    • Phosphatidylinositol-specific phospholipase C
    • pseudogene
    • 1-phosphatidylinositol phosphodiesterase (Phosphatidylinositol diacylglycerol-lyase) (Phosphatidylinositol-specific phospholipase C) (PI-PLC)
  • strand?: +
  • coordinates?: 1126966..1127952
  • synteny block?: BlockID0004190
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0078 (plc)
    N315:
    SA0091 (plc)
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0095 (plc)
    08BA02176:
    C248_0089 (plc)
    11819-97:
    MS7_0088
    71193:
    ST398NM01_0113
    ECT-R 2:
    ECTR2_52
    ED133:
    SAOV_0049 (plc)
    ED98:
    SAAV_0043 (plc)
    HO 5096 0412:
    SAEMRSA15_00670 (plc)
    JH1:
    SaurJH1_0086
    JH9:
    SaurJH9_0083
    JKD6008:
    SAA6008_00080 (plc)
    JKD6159:
    SAA6159_00079 (plc)
    LGA251:
    SARLGA251_00750 (plc)
    M013:
    M013TW_0088
    MRSA252:
    SAR0105 (plc)
    MSHR1132:
    SAMSHR1132_00710
    MSSA476:
    SAS0070 (plc)
    Mu3:
    SAHV_0094 (plc)
    Mu50:
    SAV0095 (plc)
    MW2:
    MW0070 (plc)
    RF122:
    SAB0038 (plc)
    ST398:
    SAPIG0113
    T0131:
    SAT0131_00082
    TCH60:
    HMPREF0772_10395 (plc)
    TW20:
    SATW20_01140 (plc)
    USA300_TCH1516:
    USA300HOU_0108 (plc)
    VC40:
    SAVC_00225

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKKCIKTLFLSIILVVMSGWYHSAHASDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGS
    N315            MKKCIKTLFLSIILVVMGGWYHSAHASDSLSKSPENWMSKLDESKHLTEINMPGSHDSGS
    NCTC8325        MKKCIKTLFLSIILVVMSGWYHSAHASDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGS
    Newman          MKKCIKTLFLSIILVVMSGWYHSAHASDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGS
    USA300_FPR3757  MKKCIKTLFLSIILVVMSGWYHSAHASDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGS
                    *****************.************************:.*******:********

    COL             FTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLD
    N315            FTLTDPVKSVWAKTQGKDYLTQMKSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLD
    NCTC8325        FTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLD
    Newman          FTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLD
    USA300_FPR3757  FTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLD
                    ***.***********.********************************************

    COL             DAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTGSNANPTL
    N315            DAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTGSNANPTL
    NCTC8325        DAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTGSNANPTL
    Newman          DAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTGSNANPTL
    USA300_FPR3757  DAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTGSNANPTL
                    ************************************************************

    COL             KETKGKIVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDK
    N315            KETKGKIVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDK
    NCTC8325        KETKGKIVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDK
    Newman          KETKGKIVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDK
    USA300_FPR3757  KETKGKIVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDK
                    ************************************************************

    COL             KVEAVKNLLAKAKTDSNKDNVYVNFLSVASGGSAFNSTYNYASHINPEIAKTIKANGKAR
    N315            KVEAVKNLLAKAKTDSNKDNVYVNFLSVASGGSAFNSTYNYASHINPEIAKTIKENGKAR
    NCTC8325        KVEAVKNLLAKAKTDSNKDNVYVNFLSVASGGSAFNSTYNYASHINPEIAKTIKANGKAR
    Newman          KVEAVKNLLAKAKTDSNKDNVYVNFLSVASGGSAFNSTYNYASHINPEIAKTIKANGKAR
    USA300_FPR3757  KVEAVKNLLAKAKTDSNKDNVYVNFLSVASGGSAFNSTYNYASHINPEIAKTIKANGKAR
                    ****************************************************** *****

    COL             TGWLIVDYAGYTWPGYDDIVSEIIDSNK
    N315            TGWLIVDYAGYPWPGYDDIVSEIIDSNK
    NCTC8325        TGWLIVDYAGYTWPGYDDIVSEIIDSNK
    Newman          TGWLIVDYAGYTWPGYDDIVSEIIDSNK
    USA300_FPR3757  TGWLIVDYAGYTWPGYDDIVSEIIDSNK
                    ***********.****************