PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000975000
• symbol^?: capB
• synonym:
• description^?: capsular polysaccharide biosynthesis protein Cap5B

  descriptions from strain specific annotations:

  • capsular polysaccharide biosynthesis protein Cap5B
  • capsular polysaccharide biosynthesis protein CapB
  • capsular polysaccharide synthesis enzyme CapB
  • capsular polysaccharide synthesis protein Cap5B
  • tyrosine-protein kinase
  • capsular polysaccharide synthesis enzyme Cap5B
  • capsular polysaccharide synthesis enzyme Cap8B
  • exopolysaccharide tyrosine-protein kinase
  • Non-specific protein-tyrosine kinase
  • putative tyrosine-protein kinase capB
  • Tyrosine-protein kinase (capsular polysaccharide biosynthesis)
  • Tyrosine-protein kinase EpsD / Capsular polysaccharide synthesis enzyme Cap5B
  • tyrosine-protein kinase YwqD
• strand^?: +
• coordinates^?: 1231298..1231993
• synteny block^?: BlockID0005090
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0137 (cap5B)
N315:
SA0145 (capB)
NCTC8325:
SAOUHSC_00115
Newman:
NWMN_0096 (capB)
USA300_FPR3757:
SAUSA300_0153 (cap5B)
04-02981:
SA2981_0151 (capB)
08BA02176:
C248_0139 (capB)
11819-97:
MS7_0144
6850:
RSAU_000104 (capB1)
71193:
ST398NM01_0164
ECT-R 2:
ECTR2_107
ED133:
SAOV_0097
ED98:
SAAV_0118 (cap5B)
HO 5096 0412:
SAEMRSA15_01160 (capB)
JH1:
SaurJH1_0141
JH9:
SaurJH9_0136
JKD6008:
SAA6008_00128 (cap5B)
JKD6159:
SAA6159_00134 (cap5B)
LGA251:
SARLGA251_01240 (capB)
M013:
M013TW_0140
MRSA252:
SAR0152 (capB)
MSHR1132:
SAMSHR1132_01240
MSSA476:
SAS0125
Mu3:
SAHV_0149 (capB)
Mu50:
SAV0150 (capB)
MW2:
MW0125 (cap8B)
RF122:
SAB0091 (capB)
ST398:
SAPIG0164
T0131:
SAT0131_00140
TCH60:
HMPREF0772_10348 (cap5B)
TW20:
SATW20_01610 (capB)
USA300_TCH1516:
USA300HOU_0164 (cap5B)
VC40:
SAVC_00520

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ---MSKKENTTTTLFVYEKPKSTISEKFRGIRSNIMFSKANGEVKRLLVTSEKPGAGKST
  N315            ---MSKKENTTTTLFVYEKPKSTISEKFRGIRSNIMFSKANGEVKRLLVTSEKPGAGKST
  NCTC8325        ---MSKKENTTTTLFVYEKPKSTISEKFRGIRSNIMFSKANGEVKRLLVTSEKPGAGKST
  Newman          MLLMSKKENTTTTLFVYEKPKSTISEKFRGIRSNIMFSKANGEVKRLLVTSEKPGAGKST
  USA300_FPR3757  ---MSKKENTTTTLFVYEKPKSTISEKFRGIRSNIMFSKANGEVKRLLVTSEKPGAGKST
                     *********************************************************
  
  COL             VVSNVAITYAQAGYKTLVIDGDMRKPTQNYIFNEQNNNGLSSLIIGRTTMSEAITSTEIE
  N315            VVSNVAITYAQAGYKTLVIDGDMCKPTQNYIFNEQNNNGLSSLIIGRTTMSEAITSTEIE
  NCTC8325        VVSNVAITYAQAGYKTLVIDGDMRKPTQNYIFNEQNNNGLSSLIIGRTTMSEAITSTEIE
  Newman          VVSNVAITYAQAGYKTLVIDGDMRKPTQNYIFNEQNNNGLSSLIIGRTTMSEAITSTEIE
  USA300_FPR3757  VVSNVAITYAQAGYKTLVIDGDMRKPTQNYIFNEQNNNGLSSLIIGRTTMSEAITSTEIE
                  *********************** ************************************
  
  COL             NLDLLTAGPVPPNPSELIGSERFKELVDLFNKRYDIIIVDTPPVNTVTDAQLYARAIKDS
  N315            NLDLLTAGPVPPNPSELIGSERFKELVDLFNKRYDIIIVDTPPVNTVTDAQLYARAIKDS
  NCTC8325        NLDLLTAGPVPPNPSELIGSERFKELVDLFNKRYDIIIVDTPPVNTVTDAQLYARAIKDS
  Newman          NLDLLTAGPVPPNPSELIGSERFKELVDLFNKRYDIIIVDTPPVNTVTDAQLYARAIKDS
  USA300_FPR3757  NLDLLTAGPVPPNPSELIGSERFKELVDLFNKRYDIIIVDTPPVNTVTDAQLYARAIKDS
                  ************************************************************
  
  COL             LLVIDSEKNDKNEVKKAKALMEKAGSNILGVILNKTKVDKSSSYYHYYGDE
  N315            LLVIDSEKNDKNEVKKAKALMEKAGSNILGVILNKTKVDKSSSYYHYYGDE
  NCTC8325        LLVIDSEKNDKNEVKKAKALMEKAGSNILGVILNKTKVDKSSSYYHYYGDE
  Newman          LLVIDSEKNDKNEVKKAKALMEKAGSNILGVILNKTKVDKSSSYYHYYGDE
  USA300_FPR3757  LLVIDSEKNDKNEVKKAKALMEKAGSNILGVILNKTKVDKSSSYYHYYGDE
                  ***************************************************