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Summary[edit source | edit]

  • pan ID?: SAUPAN001042000
  • symbol?:
  • description?: SepS16A
  • strand?: +
  • coordinates?: 1317543..1318781
  • synteny block?: BlockID0005690
  • occurrence?: in 63% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0188
    11819-97:
    MS7_0188
    71193:
    ST398NM01_0214
    ECT-R 2:
    ED133:
    SAOV_0141
    ED98:
    HO 5096 0412:
    SAEMRSA15_01610
    JH1:
    JH9:
    JKD6008:
    SAA6008_00174
    JKD6159:
    SAA6159_00177
    LGA251:
    SARLGA251_01670
    M013:
    M013TW_0184
    MRSA252:
    SAR0197
    MSHR1132:
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    SAPIG0214
    T0131:
    SAT0131_00190
    TCH60:
    HMPREF0772_10302
    TW20:
    SATW20_02060
    USA300_TCH1516:
    USA300HOU_0209
    VC40:
    SAVC_00750

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MDNRNMINRVFSQKILHQIAIKNKSDVVDEAYDFYIQGPKNINVIQKMKSLYNYLKKSYR
    NCTC8325        MDNRNMINRVFSQKILHQIAIKNKSDVVDEAYDFYIQGPKNINVIQKMKSLYNYLKKSYR
    Newman          MDNRNMINRVFSQKILHQIAIKNKSDVVDEAYDFYIQGPKNINVIQKMKSLYNYLKKSYR
    USA300_FPR3757  MDNRNMINRVFSQKILHQIAIKNKSDVVDEAYDFYIQGPKNINVIQKMKSLYNYLKKSYR
                    ************************************************************

    COL             NEYFYKNTILNKLLLGRHSINTTTALSEMPIGKSIADFILLNGKGVVYEIKTELDKLDRL
    NCTC8325        NEYFYKNTILNKLLLGRHSINTTTALSEMPIGKSIADFILLNGKGVVYEIKTELDKLDRL
    Newman          NEYFYKNTILNKLLLGRHSINTTTALSEMPIGKSIADFILLNGKGVVYEIKTELDKLDRL
    USA300_FPR3757  NEYFYKNTILNKLLLGRHSINTTTALSEMPIGKSIADFILLNGKGVVYEIKTELDKLDRL
                    ************************************************************

    COL             DNQINDYYEVFNYVVVITNDKHLNKVMARYKDTTVGILVLTTRNTLSEVQKPKENNSLLN
    NCTC8325        DNQINDYYEVFNYVVVITNDKHLNKVMARYKDTTVGILVLTTRNTLSEVQKPKENNSLLN
    Newman          DNQINDYYEVFNYVVVITNDKHLNKVMARYKDTTVGILVLTTRNTLSEVQKPKENNSLLN
    USA300_FPR3757  DNQINDYYEVFNYVVVITNDKHLNKVMARYKDTTVGILVLTTRNTLSEVQKPKENNSLLN
                    ************************************************************

    COL             TKAMYNFLRKEERKRVIAQNHMDVPTYNDFTEYDVLFDVFKEIPMTKLHNNMISELKKRG
    NCTC8325        TKAMYNFLRKEERKRVIAQNHMDVPTYNDFTEYDVLFDVFKEIPMTKLHNNMISELKKRG
    Newman          TKAMYNFLRKEERKRVIAQNHMDVPTYNDFTEYDVLFDVFKEIPMTKLHNNMISELKKRG
    USA300_FPR3757  TKAMYNFLRKEERKRVIAQNHMDVPTYNDFTEYDVLFDVFKEIPMTKLHNNMISELKKRG
                    ************************************************************

    COL             NMKEYKDEFLAAPAEIKFLLYFAKMTKKDKNKLYHFLKED
    NCTC8325        NMKEYKDEFLAAPAEIKFLLYFAKMTKKDKNKLYHFLKED
    Newman          NMKEYKDEFLAAPAEIKFLLYFAKMTKKDKNKLYHFLKED
    USA300_FPR3757  NMKEYKDEFLAAPAEIKFLLYFAKMTKKDKNKLYHFLKED
                    ****************************************