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Summary[edit source | edit]

  • pan ID?: SAUPAN001123000
  • symbol?: tarI'
  • description?: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

      descriptions from strain specific annotations:

    • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
    • ribitol-5-phosphate cytidylyltransferase
    • 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, putative
    • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1, IspD_1
    • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase 1)(MEP cytidylyltransferase 1) (MCT 1)
    • D-ribitol-5-phosphate cytidylyltransferase
  • strand?: +
  • coordinates?: 1396608..1397338
  • synteny block?: BlockID0006430
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0236 (ispD)
    N315:
    SA0241 (ispD)
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0251
    08BA02176:
    C248_0238
    11819-97:
    MS7_0239 (ispD1)
    71193:
    ST398NM01_0263
    ECT-R 2:
    ECTR2_212
    ED133:
    SAOV_0190
    ED98:
    SAAV_0219 (ispD)
    HO 5096 0412:
    SAEMRSA15_02100
    JH1:
    SaurJH1_0242
    JH9:
    SaurJH9_0236
    JKD6008:
    SAA6008_00224 (ispD_1)
    JKD6159:
    SAA6159_00228 (ispD_1)
    LGA251:
    SARLGA251_02150 (ispD1)
    M013:
    M013TW_0232
    MRSA252:
    SAR0246 (ispD)
    MSHR1132:
    SAMSHR1132_02190
    MSSA476:
    SAS0227 (ispD)
    Mu3:
    SAHV_0250
    Mu50:
    SAV0251 (ispD)
    MW2:
    MW0227 (ispD)
    RF122:
    SAB0190
    ST398:
    SAPIG0263
    T0131:
    SAT0131_00243
    TCH60:
    HMPREF0772_10252 (ispD1)
    TW20:
    SATW20_02530 (ispD1)
    USA300_TCH1516:
    USA300HOU_0262 (ispD2)
    VC40:
    SAVC_00995

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MIYAGILAGGIGSRMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISH
    N315            MIYAGILAGGIGSRMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISH
    NCTC8325        --------------MGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISH
    Newman          MIYAGILAGGIGSRMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISH
    USA300_FPR3757  --------------MGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISH
                                  **********************************************

    COL             TQDILKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQR
    N315            TQDILKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQR
    NCTC8325        TQDILKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQR
    Newman          TQDILKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQR
    USA300_FPR3757  TQDILKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQR
                    ************************************************************

    COL             IIKENIEVAAKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDS
    N315            IIKENIEVAAKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDS
    NCTC8325        IIKENIEVAAKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDS
    Newman          IIKENIEVAAKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDS
    USA300_FPR3757  IIKENIEVAAKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDS
                    ************************************************************

    COL             YRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
    N315            YRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
    NCTC8325        YRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
    Newman          YRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
    USA300_FPR3757  YRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
                    **********************************************************