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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001206000
  • symbol?:
  • description?: lipoprotein, putative

      descriptions from strain specific annotations:

    • lipoprotein, putative
    • putative lipoprotein
  • strand?: +
  • coordinates?: 1477750..1482508
  • synteny block?: BlockID0007180
  • occurrence?: in 25% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0281
    11819-97:
    71193:
    ST398NM01_0306
    ECT-R 2:
    ED133:
    SAOV_0237
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    SAPIG0306
    T0131:
    TCH60:
    TW20:
    USA300_TCH1516:
    USA300HOU_0316
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTTKENIDILRKPGAQALSLASLFMILFSCLTFFFGLDYERFPNYLKITTIIELIIIIIS
    Newman          MTTKENIDILRKPGAQALSLASLFMILFSCLTFFFGLDYERFPNYLKITTIIELIIIIIS
    USA300_FPR3757  MTTKENIDILRKPGAQALSLASLFMILFSCLTFFFGLDYERFPNYLKITTIIELIIIIIS
                    ************************************************************

    COL             LLQWIRFIDFEKESAQKYKKIYARFLVIINVLTTITAVFATCNLYYFVAVQNHYDLFNYW
    Newman          LLQWIRFIDFEKESAQKYKKIYARFLVIINVLTTITAVFATCNLYYFVAVQNHYDLFNYW
    USA300_FPR3757  LLQWIRFIDFEKESAQKYKKIYARFLVIINVLTTITAVFATCNLYYFVAVQNHYDLFNYW
                    ************************************************************

    COL             LMGTISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSAFIYIERIIEYI
    Newman          LMGTISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSAFIYIERIIEYI
    USA300_FPR3757  LMGTISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSAFIYIERIIEYI
                    ************************************************************

    COL             LVPNVVESKFVIMVSIIIIACTQFVAFQFIMQYSRFYIFELNTEDDD
    Newman          LVPNVVESKFVIMVSIIIIACTQFVAFQFIMQYSRFYIFELNTEDDD
    USA300_FPR3757  LVPNVVESKFVIMVSIIIIACTQFVAFQFIMQYSRFYIFELNTEDDD
                    ***********************************************