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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001699000
  • symbol?:
  • description?: phiETA ORF57-like protein

      descriptions from strain specific annotations:

    • phiETA ORF57-like protein
    • phage protein
  • strand?: +
  • coordinates?: 2040665..2042488
  • synteny block?: BlockID0011210
  • occurrence?: in 19% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    JH1:
    SaurJH1_0368
    JH9:
    SaurJH9_0359
    JKD6008:
    SAA6008_01842
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    SATW20_03800
    USA300_TCH1516:
    VC40:

Genome Viewer[edit source | edit]

NCTC8325 chromosome
Newman chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    NCTC8325        MVVDNFSKDDNLIELQTTSQYNPVIDTNISFYESDRGTGVLNFAVTKNNRPLSISSEHVK
    Newman          MIVDNFSKDDNLIELQTTSQYNPIIDTNISFYESDRGTGVLNFAVTKNNRPLSISSEHVK
                    *:*********************:************************************

    NCTC8325        TSIVLKTDDYNVDRGAYISDELTIVDAINGRLQYVIPNEFLKHSGKVHAQAFFTQNGSNN
    Newman          TSIVLKTDDYNVDRGAYISDELTIVDAINGRLQYVIPNEFLKHSGKVHAQAFFTQNGSNN
                    ************************************************************

    NCTC8325        VVVERQFSFNIENDLVSGFDGITKLVYIKSIQDTIEAVGKDFNQLKQNMADTQTLIAKVN
    Newman          VVVERQFSFNIENDLVSGFDGITKLVYIKSIQDTIEAVGKDFNQLKQNMADTQTLIAKVN
                    ************************************************************

    NCTC8325        DSATKGIQQIEIKQNEAIQAITATQTSATQAVTAEFDKIVEKEQAIFERVNEVEQQINGA
    Newman          DSATKGIQQIEIKQNEAIQAITATQTSATQAVTAEFDKIVEKEQAIFERVNEVEQQINGA
                    ************************************************************

    NCTC8325        DLVKGNSTTNWQKSKLTDDYGKAIESYEQSIDSVLSAVNTSRIIHITNATDAPEKTDIGT
    Newman          DLVKGNSTTNWQKSKLTDDYGKAIESSEQSIDSVLSTVNTSRIIHITSATDAPSFKDIGT
                    ************************** *********:**********.*****. .****

    NCTC8325        LEKPGQDGVDDGSSFDESTYTSSKSGVLVVYVVDNNTARATWYPDDSNDEYTKYKIYGTW
    Newman          VDTPKEDGVDDGSDIPVAPNTLGKSGVLVVYVVDDSTARATWYPDDSNDEYTKYKISGTW
                    ::.* :*******.:  :. * .***********:.******************** ***

    NCTC8325        YPFYKKNDGNLTKQFVEETSNNALNQAKQYVDDKFGTTSWQQHKMTEANGQSIQVNLNNA
    Newman          YPFYKKNDGDLTKQFVEETSNNALNQAKQYVDDKFGTTSWQQHKLTEPNGQSIQVNLNNA
                    *********:**********************************:**.************

    NCTC8325        QGDLGYLTAGNYYATRVPDLPGSVESYEGYLSVFVKDDTNKLFNFTPYNSKKIYTRSITN
    Newman          QGDLGYLTAGNYYATRVPDLPSGVESYEGYLSVFVKDDTNKLFNFTPYNSKKIYTRSITN
                    *********************..*************************************

    NCTC8325        GRLEQQWTVPNEHKSTVLFDGGANGVGTTINLTEPYTNYSILLVSGTYPGGVIEGFGLTA
    Newman          GRLEQQWTVPNEHKSTVLFDGGANGVGTTINLTEPYTNYSILLVSGTYPGGVIEGFGLTA
                    ************************************************************

    NCTC8325        LPNAIQLSKANVVDSDGNGGGIYECLLSKTSSTTLRIDNDVYFDLGKTSGSGANANKVTI
    Newman          LPNAIQLSKANVVDSDGNGGGIYECLLSKTSSTTLRIDNDVYFDLGKTSGSGANANKVTI
                    ************************************************************

    NCTC8325        TKIMGWK
    Newman          TKIMGWK
                    *******