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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001833000
  • symbol?:
  • description?: phage portal protein

      descriptions from strain specific annotations:

    • phage portal protein
    • prophage L54a, HK97 family portal protein
    • HK97 family phage portal protein
    • phiSLT ORF412-like protein, portal protein
    • phage portal protein, HK97 family
    • portal protein
  • strand?: -
  • coordinates?: 2278070..2279308
  • synteny block?: BlockID0012090
  • occurrence?: in 47% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0350
    11819-97:
    MS7_1467
    71193:
    ECT-R 2:
    ED133:
    ED98:
    SAAV_2031
    HO 5096 0412:
    SAEMRSA15_13730
    JH1:
    SaurJH1_1080
    JH9:
    SaurJH9_1060
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR1518
    MSHR1132:
    MSSA476:
    SAS0933
    Mu3:
    Mu50:
    MW2:
    MW1400
    RF122:
    ST398:
    SAPIG0374
    T0131:
    TCH60:
    HMPREF0772_11691
    TW20:
    USA300_TCH1516:
    USA300HOU_1452
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNVIAKENIVTRIKKKLIDNWIDQSTSKLYDFSPWKNRSFWGVINNTLETNETIFSAITK
    NCTC8325        MNVIAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITK
    USA300_FPR3757  MNVIAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITK
                    *************************:***********:**********************

    COL             LSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER
    NCTC8325        LSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER
    USA300_FPR3757  LSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER
                    ************************************************************

    COL             DIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQ
    NCTC8325        DIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQ
    USA300_FPR3757  DIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQ
                    ************************************************************

    COL             GISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQYYEENG
    NCTC8325        GISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENG
    USA300_FPR3757  GISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQYYEENG
                    ****************************************..******************

    COL             GILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELN
    NCTC8325        GILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELN
    USA300_FPR3757  GILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELN
                    ******************************************:*****************

    COL             RFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRS
    NCTC8325        RFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRS
    USA300_FPR3757  RFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRS
                    ************************************************************

    COL             GYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES
    NCTC8325        GYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES
    USA300_FPR3757  GYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES
                    ****************************************************