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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001835000
  • symbol?:
  • description?: terminase

      descriptions from strain specific annotations:

    • terminase
    • prophage L54a, terminase, small subunit
    • terminase small subunit
    • phiSLT ORF 101-like protein, terminase, small subunit
    • phage terminase, small subunit
    • phage terminase, small subunit, , P27
    • phage terminase small subunit
    • phage terminase small subunit P27
  • strand?: -
  • coordinates?: 2286299..2286604
  • synteny block?: BlockID0012110
  • occurrence?: in 47% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0348
    11819-97:
    MS7_1469
    71193:
    ECT-R 2:
    ED133:
    ED98:
    SAAV_2033
    HO 5096 0412:
    SAEMRSA15_13750
    JH1:
    SaurJH1_1078
    JH9:
    SaurJH9_1058
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR1520
    MSHR1132:
    MSSA476:
    SAS0931
    Mu3:
    Mu50:
    MW2:
    MW1402
    RF122:
    ST398:
    SAPIG0372
    T0131:
    TCH60:
    HMPREF0772_11689
    TW20:
    USA300_TCH1516:
    USA300HOU_1454
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKLTKKQLKEYIEDYKKSDDILINLYIETYEFYCRLRDELKNSDLMIEHTNKAGASNIIK
    NCTC8325        MKLTKKQLKEYIEDYKKSDDILINLYIETYEFYCRLRDELKNSDLMIEHTNKAGASNIVK
    USA300_FPR3757  MKLTKKQLKEYIEDYKKSDDILINLYIETYEFYCRLRDELKNSDLMIEHTNKAGASNIVK
                    **********************************************************:*

    COL             NPLSIELTKTVQTLNNLLKSMGLTAAQRKKIVQEEGGFGDY
    NCTC8325        NPLSIELTKTVQTLNNLLKSMGLTAAQRKKIVQEEGGFGDY
    USA300_FPR3757  NPLSIELTKTVQTLNNLLKSMGLTAAQRKKIVQEEGGFGDY
                    *****************************************