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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

Summary[edit | edit source]

  • pan ID?: SAUPAN001836000
  • symbol?:
  • synonym:
  • description?: HNH endonuclease

      descriptions from strain specific annotations:

    • HNH endonuclease
    • bacteriophage L54a HNH endonuclease family protein
    • phiSLT ORF 104b-like protein
    • prophage L54a, HNH endonuclease
    • bacteriophage L54a, HNH endonuclease family protein
    • HNH endonuclease family protein
    • phage endonuclease
    • phage protein
    • prophage L54a
  • strand?: -
  • coordinates?: 2286736..2287056
  • synteny block?: BlockID0012120
  • occurrence?: in 42% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0347
    11819-97:
    MS7_1470
    6850:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    SAAV_2034
    HO 5096 0412:
    SAEMRSA15_13760
    JH1:
    SaurJH1_1077
    JH9:
    SaurJH9_1057
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR1521
    MSHR1132:
    MSSA476:
    SAS0930
    Mu3:
    Mu50:
    MW2:
    MW1403
    RF122:
    ST398:
    SAPIG0371
    T0131:
    TCH60:
    HMPREF0772_11688
    TW20:
    USA300_TCH1516:
    VC40:

Genome Viewer[edit | edit source]

COL
NCTC8325
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MTKHNNIYKHGRKSYQYDWFYHSKAWKKLREIALDRDNYLCQMCLREDIITDAKIVHHII
    NCTC8325        MTKHNNIYKHGRKSYQYDWFYHSKAWKKLREIALDRDNHLCQMCLREDIVTDANIVHHII
    USA300_FPR3757  MTKHNNIYKHGRKSYQYDWFYHSKAWKKLREIALDRDNHLCQMCLREDIVTDANIVHHII
                    **************************************:**********:***:******

    COL             YVDEDFNKALDLDNLMSVCYSCHNKIHANDNDKSNLKKIRVLKI
    NCTC8325        YVDEDFNKALDLDNLMSVCYSCHNKIHANDNDKSNLKKIRVLKI
    USA300_FPR3757  YVDEDFNKALELDNLMSVCYGCHNKIHANGNDKSNLKKIRVLKI
                    **********:*********.********.**************