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Summary[edit source | edit]

  • pan ID?: SAUPAN002178000
  • symbol?: metQ2
  • description?: ABC transporter substrate-binding protein

      descriptions from strain specific annotations:

    • ABC transporter substrate-binding protein
    • methionine ABC transporter substrate-binding protein
    • NLPA lipoprotein
    • ABC superfamily ATP binding cassette transporter, binding protein
    • ABC transporter, substrate-binding protein
    • ABC transporter ATP-binding protein
    • lipoprotein
    • membrane lipoprotein
    • NLPA lipofamily protein
    • putative lipoprotein
  • strand?: +
  • coordinates?: 2682131..2683004
  • synteny block?: BlockID0014790
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0439
    08BA02176:
    C248_0513
    11819-97:
    MS7_0437
    71193:
    ST398NM01_0529
    ECT-R 2:
    ECTR2_397
    ED133:
    SAOV_0481
    ED98:
    SAAV_0406
    HO 5096 0412:
    SAEMRSA15_03890
    JH1:
    SaurJH1_0498
    JH9:
    SaurJH9_0485
    JKD6008:
    SAA6008_00467
    JKD6159:
    SAA6159_00413
    LGA251:
    SARLGA251_03970
    M013:
    M013TW_0428
    MRSA252:
    SAR0463
    MSHR1132:
    SAMSHR1132_04080
    MSSA476:
    SAS0421
    Mu3:
    SAHV_0461
    Mu50:
    SAV0464
    MW2:
    MW0418
    RF122:
    SAB0413
    ST398:
    SAPIG0529
    T0131:
    SAT0131_00504
    TCH60:
    HMPREF0772_10059
    TW20:
    SATW20_05320
    USA300_TCH1516:
    USA300HOU_0464
    VC40:
    SAVC_01905

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKRLIGLVIVALVLLAACGGNNDKKVTIGVASNDTKAWEKVKELAKKDDIDVEIKHFSDY
    N315            MKRLIGLVIVALVLLAACGSNNDKKVTIGVASNDTKAWEKVKELAKKDDIDVEIKHFSDY
    NCTC8325        MKRLIGLVIVALVLLAACGGNNDKKVTIGVASNDTKAWEKVKELAKKDDIDVEIKHFSDY
    Newman          MKRLIGLVIVALVLLAACGGNNDKKVTIGVASNDTKAWEKVKELAKKDDIDVEIKHFSDY
    USA300_FPR3757  MKRLIGLVIVALVLLAACGGNNDKKVTIGVASNDTKAWEKVKELAKKDDIDVEIKHFSDY
                    *******************.****************************************

    COL             NLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTTVLAPLGIYSDKIKDVKKVK
    N315            NLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTTVLAPLGIYSDKIKDVKKVK
    NCTC8325        NLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTTVLAPLGIYSDKIKDVKKVK
    Newman          NLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTTVLAPLGIYSDKIKDVKKVK
    USA300_FPR3757  NLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTTVLAPLGIYSDKIKDVKKVK
                    ************************************************************

    COL             DGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQTA
    N315            DGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQTA
    NCTC8325        DGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQTA
    Newman          DGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQTA
    USA300_FPR3757  DGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQTA
                    ************************************************************

    COL             RALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKI
    N315            RALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKI
    NCTC8325        RALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKI
    Newman          RALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKI
    USA300_FPR3757  RALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKI
                    ************************************************************

    COL             VELYHSKEAQKALQEDVKDGEKPVNLSKDEIKAIETSLAK
    N315            VELYHSKEAQKALQEDVKDGEKPVNLSKDEIKAIETSLAK
    NCTC8325        VELYHSKEAQKALQEDVKDGEKPVNLSKDEIKAIETSLAK
    Newman          VELYHSKEAQKALQEDVKDGEKPVNLSKDEIKAIETSLAK
    USA300_FPR3757  VELYHSKEAQKALQEDVKDGEKPVNLSKDEIKAIETSLAK
                    ****************************************