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Summary[edit source | edit]

  • pan ID?: SAUPAN002260000
  • symbol?: lysS
  • description?: lysyl-tRNA synthetase

      descriptions from strain specific annotations:

    • lysyl-tRNA synthetase
    • Lysyl-tRNA synthetase (class II)
    • lysine--tRNA ligase
    • asparaginyl-tRNA synthetase
  • strand?: +
  • coordinates?: 2766551..2768123
  • synteny block?: BlockID0015590
  • occurrence?: in 97% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0562 (lysS)
    N315:
    SA0475 (lysS)
    NCTC8325:
    Newman:
    NWMN_0479 (lysS)
    USA300_FPR3757:
    04-02981:
    SA2981_0492 (lysS)
    08BA02176:
    C248_0574 (lysS)
    11819-97:
    MS7_0494 (lysS)
    71193:
    ST398NM01_0583
    ECT-R 2:
    ECTR2_457 (lysS)
    ED133:
    SAOV_0540
    ED98:
    SAAV_0465 (lysS)
    HO 5096 0412:
    SAEMRSA15_04430 (lysS)
    JH1:
    SaurJH1_0553 (lysS)
    JH9:
    SaurJH9_0539 (lysS)
    JKD6008:
    SAA6008_00522 (lysS)
    JKD6159:
    SAA6159_00468 (lysS)
    LGA251:
    SARLGA251_04510 (lysS)
    M013:
    M013TW_0489
    MRSA252:
    SAR0518 (lysS)
    MSHR1132:
    SAMSHR1132_04610
    MSSA476:
    SAS0474 (lysS)
    Mu3:
    SAHV_0514 (lysS)
    Mu50:
    SAV0517 (lysS)
    MW2:
    MW0472 (lysS)
    RF122:
    SAB0466 (lysS)
    ST398:
    SAPIG0583 (lysS)
    T0131:
    SAT0131_00564
    TCH60:
    HMPREF0772_10001 (lysS)
    TW20:
    SATW20_05850 (lysS)
    USA300_TCH1516:
    VC40:
    SAVC_02170 (lysS)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             --------------------MSEEMNDQMLVRRQKLQELYDLGIDPFGSKFDRSGLSSDL
    N315            --------------------MSEEMNDQMLVRRQKLQELYDLGIDPFGSKFDRSGLSSDL
    NCTC8325        --------------------MSEEMNDQMLVRRQKLQELYDLGIDPFGSKFDRSGLSSDL
    Newman          MFECTSWNTKGLQQVKGEKVMSEEMNDQMLVRRQKLQELYDLGIDPFGSKFDRSGLSSDL
    USA300_FPR3757  --------------------MSEEMNDQMLVRRQKLQELYDLGIDPFGSKFDRSGLSSDL
                                        ****************************************

    COL             KEEWDQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDD
    N315            KEEWDQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDD
    NCTC8325        KEEWDQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDD
    Newman          KEEWDQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDD
    USA300_FPR3757  KEEWDQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDD
                    ************************************************************

    COL             EFDLWKNADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYR
    N315            EFDLWKNADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYR
    NCTC8325        EFDLWKNADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYR
    Newman          EFDLWKNADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYR
    USA300_FPR3757  EFDLWKNADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYR
                    ************************************************************

    COL             QRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTHHN
    N315            QRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTHHN
    NCTC8325        QRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTHHN
    Newman          QRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTHHN
    USA300_FPR3757  QRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTHHN
                    ************************************************************

    COL             ALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYH
    N315            ALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYH
    NCTC8325        ALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYH
    Newman          ALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYH
    USA300_FPR3757  ALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYH
                    ************************************************************

    COL             DIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFYEVKSDE
    N315            DIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFYEVKSDE
    NCTC8325        DIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFYEVKSDE
    Newman          DIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFYEVKSDE
    USA300_FPR3757  DIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFYEVKSDE
                    ************************************************************

    COL             EAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPR
    N315            EAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPR
    NCTC8325        EAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPR
    Newman          EAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPR
    USA300_FPR3757  EAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPR
                    ************************************************************

    COL             FTDRFELFIVGREHANAFTELNDPIDQKGRFEAQLVEKAQGNDEAHEMDEDYIEALEYGM
    N315            FTDRFELFIVGREHANAFTELNDPIDQKGRFEAQLVEKAQGNDEAHEMDEDYIEALEYGM
    NCTC8325        FTDRFELFIVGREHANAFTELNDPIDQKGRFEAQLVEKAQGNDEAHEMDEDYIEALEYGM
    Newman          FTDRFELFIVGREHANAFTELNDPIDQKGRFEAQLVEKAQGNDEAHEMDEDYIEALEYGM
    USA300_FPR3757  FTDRFELFIVGREHANAFTELNDPIDQKGRFEAQLVEKAQGNDEAHEMDEDYIEALEYGM
                    ************************************************************

    COL             PPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK
    N315            PPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK
    NCTC8325        PPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK
    Newman          PPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK
    USA300_FPR3757  PPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK
                    ***********************************