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Summary[edit source | edit]

  • pan ID?: SAUPAN002645000
  • symbol?:
  • description?: putative lipoprotein

      descriptions from strain specific annotations:

    • putative lipoprotein
    • Lipoprotein, putative
  • strand?: +
  • coordinates?: 3143665..3144556
  • synteny block?: BlockID0018800
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0718
    08BA02176:
    C248_0827
    11819-97:
    MS7_0790
    71193:
    ST398NM01_0816
    ECT-R 2:
    ECTR2_690
    ED133:
    SAOV_0777
    ED98:
    SAAV_0702
    HO 5096 0412:
    SAEMRSA15_06660
    JH1:
    SaurJH1_0781
    JH9:
    SaurJH9_0764
    JKD6008:
    SAA6008_00754
    JKD6159:
    SAA6159_00695
    LGA251:
    SARLGA251_06730
    M013:
    M013TW_0725
    MRSA252:
    SAR0794
    MSHR1132:
    SAMSHR1132_06850
    MSSA476:
    SAS0705
    Mu3:
    SAHV_0737
    Mu50:
    SAV0740
    MW2:
    MW0702
    RF122:
    SAB0692
    ST398:
    SAPIG0816
    T0131:
    SAT0131_00812
    TCH60:
    HMPREF0772_12443
    TW20:
    SATW20_08150
    USA300_TCH1516:
    USA300HOU_0767
    VC40:
    SAVC_03335

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKKIVIIAVLAILFVVISACGNKEKEAQHQFTKQFKDVEQKQKELQHVMDNIHLKEIDHL
    N315            MKKIVIIAVLAILFVVISACGNKEKEAQHQFTKQFKDVEQKQKELQHVMDNIHLKEIDHL
    NCTC8325        MKKIVIIAVLAILFVVISACGNKEKEAQHQFTKQFKDVEQKQKELQHVMDNIHLKEIDHL
    Newman          MKKIVIIAVLAILFVVISACGNKEKEAQHQFTKQFKDVEQKQKELQHVMDNIHLKEIDHL
    USA300_FPR3757  MKKIVIIAVLAILFVVISACGNKEKEAQHQFTKQFKDVEQKQKELQHVMDNIHLKEIDHL
                    ************************************************************

    COL             SKTDTTDKNSKEFKALQEDVKNHLIPKFEAYYKSAKNLPDDTMKVKKLKKEYMTLANEKK
    N315            SKTDTTDKNSKEFKALQEDVKNHLIPKFEAYYKSAKNLPDDTMKVKKLKKEYMTLANEKK
    NCTC8325        SKTDTTDKNSKEFKALQEDVKNHLIPKFEAYYKSAKNLPDDTMKVKKLKKEYMTLANEKK
    Newman          SKTDTTDKNSKEFKALQEDVKNHLIPKFEAYYKSAKNLPDDTMKVKKLKKEYMTLANEKK
    USA300_FPR3757  SKTDTTDKNSKEFKALQEDVKNHLIPKFEAYYKSAKNLPDDTMKVKKLKKEYMTLANEKK
                    ************************************************************

    COL             DAIYQLKKFIGLCNQSIKYNEDILDYTKQFEKNRYKVESEIKLADNKSEATNLTTKLEHN
    N315            DAIYQLKKFIGLCNQSIKYNEDILDYTKQFEKNRYKVESEIKLADNKSEATNLTTKLEHN
    NCTC8325        DAIYQLKKFIGLCNQSIKYNEDILDYTKQFEKNRYKVESEIKLADNKSEATNLTTKLEHN
    Newman          DAIYQLKKFIGLCNQSIKYNEDILDYTKQFEKNRYKVESEIKLADNKSEATNLTTKLEHN
    USA300_FPR3757  DAIYQLKKFIGLCNQSIKYNEDILDYTKQFEKNRYKVESEIKLADNKSEATNLTTKLEHN
                    ************************************************************

    COL             NKALRDTAKKNLDDSKENEVKGAIKNHIMPMIEKQITDINQTNISDKHVNNARKNAIEMY
    N315            NKALRDTAKKNLDDSKENEVKGAIKNHIMPMIEKQITDINQTNISDKHVNNARKNAIEMY
    NCTC8325        NKALRDTAKKNLDDSKENEVKGAIKNHIMPMIEKQITDINQTNISDKHVNNARKNAIEMY
    Newman          NKALRDTAKKNLDDSKENEVKGAIKNHIMPMIEKQITDINQTNISDKHVNNARKNAIEMY
    USA300_FPR3757  NKALRDTAKKNLDDSKENEVKGAIKNHIMPMIEKQITDINQTNISDKHVNNARKNAIEMY
                    ************************************************************

    COL             YSLQNYYNTRIETIKVSEKLSKVDVDKLPKKGIDITHGDKAFEKKLEKLEEK
    N315            YSLQNYYNTRIETIKVSEKLSKVDVDKLPKKGIDITHGDKAFEKKLEKLEEK
    NCTC8325        YSLQNYYNTRIETIKVSEKLSKVDVDKLPKKGIDITHGDKAFEKKLEKLEEK
    Newman          YSLQNYYNTRIETIKVSEKLSKVDVDKLPKKGIDITHGDKAFEKKLEKLEEK
    USA300_FPR3757  YSLQNYYNTRIETIKVSEKLSKVDVDKLPKKGIDITHGDKAFEKKLEKLEEK
                    ****************************************************