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Summary[edit source | edit]

  • pan ID?: SAUPAN003022000
  • symbol?: lipA
  • description?: lipoyl synthase

      descriptions from strain specific annotations:

    • lipoyl synthase
    • Lipoate synthase
    • lipoic acid synthetase
    • putative lipoic acid synthetase
    • Lipoyl synthase, LipA
  • strand?: +
  • coordinates?: 3414643..3415614
  • synteny block?: BlockID0021300
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0927 (lipA)
    N315:
    SA0785 (lipA)
    NCTC8325:
    Newman:
    NWMN_0796 (lipA)
    USA300_FPR3757:
    04-02981:
    SA2981_0879 (lipA)
    08BA02176:
    C248_0924 (lipA)
    11819-97:
    MS7_0880 (lipA)
    71193:
    ST398NM01_0908
    ECT-R 2:
    ECTR2_780 (lipA)
    ED133:
    SAOV_0871
    ED98:
    SAAV_0885 (lipA)
    HO 5096 0412:
    SAEMRSA15_07550 (lipA)
    JH1:
    SaurJH1_0942
    JH9:
    SaurJH9_0923
    JKD6008:
    SAA6008_00876 (lipA)
    JKD6159:
    SAA6159_00784 (lipA)
    LGA251:
    SARLGA251_08430 (lipA)
    M013:
    M013TW_0844
    MRSA252:
    SAR0887 (lipA)
    MSHR1132:
    SAMSHR1132_07770
    MSSA476:
    SAS0795
    Mu3:
    SAHV_0919 (lipA)
    Mu50:
    SAV0924 (lipA)
    MW2:
    MW0807 (lipA)
    RF122:
    SAB0791
    ST398:
    SAPIG0908 (lipA)
    T0131:
    SAT0131_00955 (rsbV)
    TCH60:
    HMPREF0772_12322 (lipA)
    TW20:
    SATW20_09250 (lipA)
    USA300_TCH1516:
    USA300HOU_0885 (lipA)
    VC40:
    SAVC_03800

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MATKNEEILRKPDWLKIKLNTNENYTGLKKMMREKNLNTVCEEAKCPNIHECWGARRTAT
    N315            MATKNEEILRKPDWLKIKLNTNENYTGLKKMMREKNLNTVCEEAKCPNIHECWGARRTAT
    NCTC8325        MATKNEEILRKPDWLKIKLNTNENYTGLKKMMREKNLNTVCEEAKCPNIHECWGARRTAT
    Newman          MATKNEEILRKPDWLKIKLNTNENYTGLKKMMREKNLNTVCEEAKCPNIHECWGARRTAT
    USA300_FPR3757  MATKNEEILRKPDWLKIKLNTNENYTGLKKMMREKNLNTVCEEAKCPNIHECWGARRTAT
                    ************************************************************

    COL             FMILGAVCTRACRFCAVKTGLPNELDLNEPERVAESVELMNLKHVVITAVARDDLRDAGS
    N315            FMILGAVCTRACRFCAVKTGLPNELDLNEPERVAESVELMNLKHVVITAVARDDLRDAGS
    NCTC8325        FMILGAVCTRACRFCAVKTGLPNELDLNEPERVAESVELMNLKHVVITAVARDDLRDAGS
    Newman          FMILGAVCTRACRFCAVKTGLPNELDLNEPERVAESVELMNLKHVVITAVARDDLRDAGS
    USA300_FPR3757  FMILGAVCTRACRFCAVKTGLPNELDLNEPERVAESVELMNLKHVVITAVARDDLRDAGS
                    ************************************************************

    COL             NVYAETVRKVRERNPFTTIEILPSDMGGDYDALETLMASRPDILNHNIETVRRLTPRVRA
    N315            NVYAETVRKVRERNPFTTIEILPSDMGGDYDALETLMASRPDILNHNIETVRRLTPRVRA
    NCTC8325        NVYAETVRKVRERNPFTTIEILPSDMGGDYDALETLMASRPDILNHNIETVRRLTPRVRA
    Newman          NVYAETVRKVRERNPFTTIEILPSDMGGDYDALETLMASRPDILNHNIETVRRLTPRVRA
    USA300_FPR3757  NVYAETVRKVRERNPFTTIEILPSDMGGDYDALETLMASRPDILNHNIETVRRLTPRVRA
                    ************************************************************

    COL             RATYDRTLEFLRRSKELQPDIPTKSSIMVGLGETIEEIYETMDDLRANDVDILTIGQYLQ
    N315            RATYDRTLEFLRRSKELQPDIPTKSSIMVGLGETIEEIYETMDDLRANDVDILTIGQYLQ
    NCTC8325        RATYDRTLEFLRRSKELQPDIPTKSSIMVGLGETIEEIYETMDDLRANDVDILTIGQYLQ
    Newman          RATYDRTLEFLRRSKELQPDIPTKSSIMVGLGETIEEIYETMDDLRANDVDILTIGQYLQ
    USA300_FPR3757  RATYDRTLEFLRRSKELQPDIPTKSSIMVGLGETIEEIYETMDDLRANDVDILTIGQYLQ
                    ************************************************************

    COL             PSRKHLKVQKYYTPLEFGKLRKVAMDKGFKHCQAGPLVRSSYHADEQVNEAAKEKQRQGE
    N315            PSRKHLKVQKYYTPLEFGKLRKVAMDKGFKHCQAGPLVRSSYHADEQVNEAAKEKQRQGE
    NCTC8325        PSRKHLKVQKYYTPLEFGKLRKVAMDKGFKHCQAGPLVRSSYHADEQVNEAAKEKQRQGE
    Newman          PSRKHLKVQKYYTPLEFGKLRKVAMDKGFKHCQAGPLVRSSYHADEQVNEAAKEKQRQGE
    USA300_FPR3757  PSRKHLKVQKYYTPLEFGKLRKVAMDKGFKHCQAGPLVRSSYHADEQVNEAAKEKQRQGE
                    ************************************************************

    COL             AQLNS
    N315            AQLNS
    NCTC8325        AQLNS
    Newman          AQLNS
    USA300_FPR3757  AQLNS
                    *****