From AureoWiki
Jump to navigation Jump to search

Summary[edit | edit source]

  • pan ID?: SAUPAN003316000
  • symbol?:
  • synonym:
  • description?: cell-wall-binding lipoprotein

      descriptions from strain specific annotations:

    • cell-wall-binding lipoprotein
    • YkyA-like cell-wall-binding lipoprotein, putative
    • Lipoprotein
    • lipoprotein, putative
    • putative cell-wall binding lipoprotein, YkyA
    • putative lipoprotein
  • strand?: +
  • coordinates?: 3683644..3684291
  • synteny block?: BlockID0024000
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1049
    08BA02176:
    C248_1119
    11819-97:
    MS7_1049
    6850:
    RSAU_000977
    71193:
    ST398NM01_1089
    ECT-R 2:
    ECTR2_947
    ED133:
    SAOV_1036
    ED98:
    SAAV_1057
    HO 5096 0412:
    SAEMRSA15_09220
    JH1:
    SaurJH1_1174
    JH9:
    SaurJH9_1152
    JKD6008:
    SAA6008_01047
    JKD6159:
    SAA6159_00948
    LGA251:
    SARLGA251_10050
    M013:
    M013TW_1024
    MRSA252:
    SAR1066
    MSHR1132:
    SAMSHR1132_09390
    MSSA476:
    SAS1027
    Mu3:
    SAHV_1084
    Mu50:
    SAV1092
    MW2:
    MW0975
    RF122:
    SAB0958
    ST398:
    SAPIG1089
    T0131:
    SAT0131_01129
    TCH60:
    HMPREF0772_12140
    TW20:
    SATW20_10870
    USA300_TCH1516:
    USA300HOU_1035
    VC40:
    SAVC_04620

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MKFGKTIAVVLASSVLLAGCTTDKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKK
    N315            MKFGKTIAVVLASSVLLAGCTTDKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKK
    NCTC8325        MKFGKTIAVVLASSVLLAGCTTDKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKK
    Newman          MKFGKTIAVVLASSVLLAGCTTDKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKK
    USA300_FPR3757  MKFGKTIAVVLASSVLLAGCTTDKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKK
                    ************************************************************

    COL             LTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVK
    N315            LTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVK
    NCTC8325        LTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVK
    Newman          LTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVK
    USA300_FPR3757  LTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVK
                    ************************************************************

    COL             RKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNY
    N315            RKEVKQLDDVLKEKYKLHGEYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNY
    NCTC8325        RKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNY
    Newman          RKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNY
    USA300_FPR3757  RKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNY
                    ******************.:****************************************

    COL             KKLKEVSDKYTKVLNKVGKEKQDVDQFK
    N315            KKLKEVSDKYTKVLNKVGKEKQDVDQFK
    NCTC8325        KKLKEVSDKYTKVLNKVGKEKQDVDQFK
    Newman          KKLKEVSDKYTKVLNKVGKEKQDVDQFK
    USA300_FPR3757  KKLKEVSDKYTKVLNKVGKEKQDVDQFK
                    ****************************