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Summary[edit source | edit]

  • pan ID?: SAUPAN003429000
  • symbol?: argF
  • description?: ornithine carbamoyltransferase
  • strand?: +
  • coordinates?: 3780701..3781711
  • synteny block?: BlockID0025100
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1181 (arcB1)
    N315:
    SA1012 (argF)
    NCTC8325:
    Newman:
    NWMN_1078 (argF)
    USA300_FPR3757:
    04-02981:
    SA2981_1125 (argF)
    08BA02176:
    C248_1195 (otc)
    11819-97:
    MS7_1124
    71193:
    ST398NM01_1163
    ECT-R 2:
    ECTR2_1023 (argF)
    ED133:
    SAOV_1167
    ED98:
    SAAV_1137 (arcB1)
    HO 5096 0412:
    SAEMRSA15_10000 (otc)
    JH1:
    SaurJH1_1252
    JH9:
    SaurJH9_1227
    JKD6008:
    SAA6008_01121 (argF)
    JKD6159:
    SAA6159_01019 (argF)
    LGA251:
    SARLGA251_10780 (otc)
    M013:
    M013TW_1100
    MRSA252:
    SAR1142 (otc)
    MSHR1132:
    SAMSHR1132_10100
    MSSA476:
    SAS1102
    Mu3:
    SAHV_1159 (argF)
    Mu50:
    SAV1169 (argF)
    MW2:
    MW1050 (argF)
    RF122:
    SAB1033
    ST398:
    SAPIG1163 (argF)
    T0131:
    SAT0131_01213 (rplF)
    TCH60:
    HMPREF0772_12065 (argF2)
    TW20:
    SATW20_11610 (otc)
    USA300_TCH1516:
    USA300HOU_1106 (arcB2)
    VC40:
    SAVC_04995

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             ---MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDST
    N315            ---MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDST
    NCTC8325        ---MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDST
    Newman          MLLMKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDST
    USA300_FPR3757  ---MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDST
                       *********************************************************

    COL             RTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETL
    N315            RTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETL
    NCTC8325        RTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETL
    Newman          RTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETL
    USA300_FPR3757  RTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETL
                    ************************************************************

    COL             AEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAA
    N315            AEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAA
    NCTC8325        AEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAA
    Newman          AEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAA
    USA300_FPR3757  AEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAA
                    ************************************************************

    COL             IMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMG
    N315            IMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMG
    NCTC8325        IMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMG
    Newman          IMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMG
    USA300_FPR3757  IMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMG
                    ************************************************************

    COL             EPDEVWKERLELLKPYQVNKEIMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREM
    N315            EPDEVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREM
    NCTC8325        EPDEVWKERLELLKPYQVNKEIMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREM
    Newman          EPDEVWKERLELLKPYQVNKEIMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREM
    USA300_FPR3757  EPDEVWKERLELLKPYQVNKEIMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREM
                    *********************:**************************************

    COL             EVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
    N315            EVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
    NCTC8325        EVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
    Newman          EVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
    USA300_FPR3757  EVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
                    ************************************