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Summary[edit source | edit]

  • pan ID?: SAUPAN003572000
  • symbol?: truB
  • description?: tRNA pseudouridine synthase B

      descriptions from strain specific annotations:

    • tRNA pseudouridine synthase B
    • tRNA pseudouridine(55) synthase TruB
    • putative tRNA pseudouridine synthase B
    • tRNA pseudouridine 55 synthase
  • strand?: +
  • coordinates?: 3909739..3910656
  • synteny block?: BlockID0026490
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1290 (truB)
    N315:
    SA1114 (truB)
    NCTC8325:
    Newman:
    NWMN_1180 (truB)
    USA300_FPR3757:
    04-02981:
    SA2981_1229 (truB)
    08BA02176:
    C248_1304
    11819-97:
    MS7_1229 (truB)
    71193:
    ST398NM01_1273
    ECT-R 2:
    ECTR2_1127 (truB)
    ED133:
    SAOV_1273 (truB)
    ED98:
    SAAV_1246 (truB)
    HO 5096 0412:
    SAEMRSA15_11040
    JH1:
    SaurJH1_1357
    JH9:
    SaurJH9_1331
    JKD6008:
    SAA6008_01226 (truB)
    JKD6159:
    SAA6159_01126 (truB)
    LGA251:
    SARLGA251_11820
    M013:
    M013TW_1211
    MRSA252:
    SAR1247
    MSHR1132:
    SAMSHR1132_11140
    MSSA476:
    SAS1205
    Mu3:
    SAHV_1261 (truB)
    Mu50:
    SAV1271 (truB)
    MW2:
    MW1154 (truB)
    RF122:
    SAB1133 (truB)
    ST398:
    SAPIG1273 (truB)
    T0131:
    SAT0131_01325
    TCH60:
    HMPREF0772_11958 (truB)
    TW20:
    SATW20_12650
    USA300_TCH1516:
    USA300HOU_1203 (truB)
    VC40:
    SAVC_05520

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MYNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYV
    N315            MYNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYV
    NCTC8325        MYNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYV
    Newman          MYNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYV
    USA300_FPR3757  MYNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYV
                    ************************************************************

    COL             MDMGKAYEATVSIGRSTTTEDQTGDTLETKGVHSADFNKDDIDRLLESFKGIIEQIPPMY
    N315            MDMGKAYEATVSIGRSTTTEDQTGDTLETKGVHSADFNKDDIDRLLENFKGVIEQIPPMY
    NCTC8325        MDMGKAYEATVSIGRSTTTEDQTGDTLETKGVHSADFNKDDIDRLLESFKGIIEQIPPMY
    Newman          MDMGKAYEATVSIGRSTTTEDQTGDTLETKGVHSADFNKDDIDRLLESFKGIIEQIPPMY
    USA300_FPR3757  MDMGKAYEATVSIGRSTTTEDQTGDTLETKGVHSADFNKDDIDRLLESFKGIIEQIPPMY
                    ***********************************************.***:********

    COL             SSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDFKENECHFKIRVICGKGTYIR
    N315            SSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDFKENECHFKIRVICGKGTYIR
    NCTC8325        SSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDFKENECHFKIRVICGKGTYIR
    Newman          SSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDFKENECHFKIRVICGKGTYIR
    USA300_FPR3757  SSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDFKENECHFKIRVICGKGTYIR
                    ************************************************************

    COL             TLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQIKELHEQDSLQNKLFPLEYGLKG
    N315            TLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQIKELHEQDSLQNKLFPLEYGLKG
    NCTC8325        TLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQIKELHEQDSLQNKLFPLEYGLKG
    Newman          TLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQIKELHEQDSLQNKLFPLEYGLKG
    USA300_FPR3757  TLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQIKELHEQDSLQNKLFPLEYGLKG
                    ************************************************************

    COL             LPSIKIKDSHIKKRILNGQKFNKNEFDNKIKDQIVFIDDDSEKVLAIYMVHPTKESEIKP
    N315            LPSIKIKDSHIKKRILNGQKFNKNEFDNKIKDQIVFIDDDSEKVLAIYMVHPTKESEIKP
    NCTC8325        LPSIKIKDSHIKKRILNGQKFNKNEFDNKIKDQIVFIDDDSEKVLAIYMVHPTKESEIKP
    Newman          LPSIKIKDSHIKKRILNGQKFNKNEFDNKIKDQIVFIDDDSEKVLAIYMVHPTKESEIKP
    USA300_FPR3757  LPSIKIKDSHIKKRILNGQKFNKNEFDNKIKDQIVFIDDDSEKVLAIYMVHPTKESEIKP
                    ************************************************************

    COL             KKVFN
    N315            KKVFN
    NCTC8325        KKVFN
    Newman          KKVFN
    USA300_FPR3757  KKVFN
                    *****