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Summary[edit source | edit]

  • pan ID?: SAUPAN003588000
  • symbol?: rny/cvfA
  • description?: phosphodiesterase

      descriptions from strain specific annotations:

    • phosphodiesterase
    • ribonuclease Y
    • 2',3'-cyclic-nucleotide 2'-phosphodiesterase
    • hydrolase
    • Hydrolase (HAD superfamily)
  • strand?: +
  • coordinates?: 3929076..3930696
  • synteny block?: BlockID0026650
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1244
    08BA02176:
    C248_1319
    11819-97:
    MS7_1244 (rny)
    71193:
    ST398NM01_1288
    ECT-R 2:
    ECTR2_1142
    ED133:
    SAOV_1288
    ED98:
    SAAV_1261
    HO 5096 0412:
    SAEMRSA15_11190
    JH1:
    SaurJH1_1372
    JH9:
    SaurJH9_1346
    JKD6008:
    SAA6008_01241
    JKD6159:
    SAA6159_01141
    LGA251:
    SARLGA251_11970 (cvfA)
    M013:
    M013TW_1228
    MRSA252:
    SAR1262
    MSHR1132:
    SAMSHR1132_11290
    MSSA476:
    SAS1220
    Mu3:
    SAHV_1276
    Mu50:
    SAV1286
    MW2:
    MW1169
    RF122:
    SAB1148
    ST398:
    SAPIG1288
    T0131:
    SAT0131_01342
    TCH60:
    HMPREF0772_11942 (cvfA)
    TW20:
    SATW20_12800 (cvfA)
    USA300_TCH1516:
    USA300HOU_1218
    VC40:
    SAVC_05595

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNLLSLLLILLGIILGVVGGYVVARNLLLQKQSQARQTAEDIVNQAHKEADNIKKEKLLE
    N315            MNLLSLLLILLGIILGVVGGYVVARNLLLQKQSQARQTAEDIVNQAHKEADNIKKEKLLE
    NCTC8325        MNLLSLLLILLGIILGVVGGYVVARNLLLQKQSQARQTAEDIVNQAHKEADNIKKEKLLE
    Newman          MNLLSLLLILLGIILGVVGGYVVARNLLLQKQSQARQTAEDIVNQAHKEADNIKKEKLLE
    USA300_FPR3757  MNLLSLLLILLGIILGVVGGYVVARNLLLQKQSQARQTAEDIVNQAHKEADNIKKEKLLE
                    ************************************************************

    COL             AKEENQILREQTEAELRERRSELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEE
    N315            AKEENQILREQTEAELRERRSELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEE
    NCTC8325        AKEENQILREQTEAELRERRSELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEE
    Newman          AKEENQILREQTEAELRERRSELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEE
    USA300_FPR3757  AKEENQILREQTEAELRERRSELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEE
                    ************************************************************

    COL             KQQQVDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQRVEEELSQDIAVLVKEKEKE
    N315            KQQQVDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQRVEEELSQDIAVLVKEKEKE
    NCTC8325        KQQQVDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQRVEEELSQDIAVLVKEKEKE
    Newman          KQQQVDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQRVEEELSQDIAVLVKEKEKE
    USA300_FPR3757  KQQQVDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQRVEEELSQDIAVLVKEKEKE
                    ************************************************************

    COL             AKEKVDKTAKELLATAVQRLAADHTSESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
    N315            AKEKVDKTAKELLATAVQRLAADHTSESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
    NCTC8325        AKEKVDKTAKELLATAVQRLAADHTSESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
    Newman          AKEKVDKTAKELLATAVQRLAADHTSESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
    USA300_FPR3757  AKEKVDKTAKELLATAVQRLAADHTSESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
                    ************************************************************

    COL             IDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVEKARKEVDDIIRE
    N315            IDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVEKARKEVDDIIRE
    NCTC8325        IDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVEKARKEVDDIIRE
    Newman          IDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVEKARKEVDDIIRE
    USA300_FPR3757  IDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVEKARKEVDDIIRE
                    ************************************************************

    COL             AGEQATFEVNAHNMHPDLVKIVGRLNYRTSYGQNVLKHSIEVAHLASMLAAELGEDETLA
    N315            AGEQATFEVNAHNMHPDLVKIVGRLNYRTSYGQNVLKHSIEVAHLASMLAAELGEDETLA
    NCTC8325        AGEQATFEVNAHNMHPDLVKIVGRLNYRTSYGQNVLKHSIEVAHLASMLAAELGEDETLA
    Newman          AGEQATFEVNAHNMHPDLVKIVGRLNYRTSYGQNVLKHSIEVAHLASMLAAELGEDETLA
    USA300_FPR3757  AGEQATFEVNAHNMHPDLVKIVGRLNYRTSYGQNVLKHSIEVAHLASMLAAELGEDETLA
                    ************************************************************

    COL             KRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYGENETVINAIHSHHGDVEPTSIISILVA
    N315            KRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYGENETVINAIHSHHGDVEPTSIISILVA
    NCTC8325        KRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYGENETVINAIHSHHGDVEPTSIISILVA
    Newman          KRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYGENETVINAIHSHHGDVEPTSIISILVA
    USA300_FPR3757  KRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYGENETVINAIHSHHGDVEPTSIISILVA
                    ************************************************************

    COL             AADALSAARPGARKETLENYIRRLERLETLSESYDGVEKAFAIQAGREIRVIVSPEEIDD
    N315            AADALSAARPGARKETLENYIRRLERLETLSESYDGVEKAFAIQAGREIRVIVSPEEIDD
    NCTC8325        AADALSAARPGARKETLENYIRRLERLETLSESYDGVEKAFAIQAGREIRVIVSPEEIDD
    Newman          AADALSAARPGARKETLENYIRRLERLETLSESYDGVEKAFAIQAGREIRVIVSPEEIDD
    USA300_FPR3757  AADALSAARPGARKETLENYIRRLERLETLSESYDGVEKAFAIQAGREIRVIVSPEEIDD
                    ************************************************************

    COL             LKSYRLARDIKNQIEDELQYPGHIKVTVVRETRAVEYAK
    N315            LKSYRLARDIKNQIEDELQYPGHIKVTVVRETRAVEYAK
    NCTC8325        LKSYRLARDIKNQIEDELQYPGHIKVTVVRETRAVEYAK
    Newman          LKSYRLARDIKNQIEDELQYPGHIKVTVVRETRAVEYAK
    USA300_FPR3757  LKSYRLARDIKNQIEDELQYPGHIKVTVVRETRAVEYAK
                    ***************************************