From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN003685000
  • symbol?:
  • description?: ABC transporter ATP-binding protein

      descriptions from strain specific annotations:

    • ABC transporter ATP-binding protein
    • ABC superfamily ATP binding cassette transporter, ABC protein
    • ABC transporter family protein
  • strand?: +
  • coordinates?: 3993216..3993733
  • synteny block?: BlockID0027510
  • occurrence?: in 78% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1274
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ECTR2_1178
    ED133:
    SAOV_1332
    ED98:
    SAAV_1298
    HO 5096 0412:
    SAEMRSA15_11660
    JH1:
    SaurJH1_1407
    JH9:
    SaurJH9_1380
    JKD6008:
    SAA6008_01283
    JKD6159:
    SAA6159_01186
    LGA251:
    M013:
    MRSA252:
    SAR1329
    MSHR1132:
    SAMSHR1132_11640
    MSSA476:
    SAS1259
    Mu3:
    SAHV_1307
    Mu50:
    SAV1318
    MW2:
    MW1206
    RF122:
    ST398:
    T0131:
    SAT0131_01386
    TCH60:
    HMPREF0772_11889
    TW20:
    SATW20_13210
    USA300_TCH1516:
    USA300HOU_1263
    VC40:
    SAVC_05835

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MIKLIQISNINKSFNKRCVLKNISFDIEQGKCIALIGKNGAGKSTLIDILIGNVNANSGE
    N315            ---MIQISNINKSFNKRCVLKNISFDIEQGKCIALIGKNGAGKSTLIDILIGNVNANSGE
    NCTC8325        MIKLIQISNINKSFNKRCVLKNISFDIEQGKCIALIGKNGAGKSTLIDILIGNVNANSGE
    Newman          MIKLIQISNINKSFNKRCVLKNISFDIEQGKCIALIGKNGAGKSTLIDILIGNVNANSGE
    USA300_FPR3757  MIKLIQISNINKSFNKRCVLKNISFDIEQGKCIALIGKNGAGKSTLIDILIGNVNANSGE
                       :********************************************************

    COL             IFDKDKLLQSENRSIMFQKTMFPDQLKVIEIINLYQSFYENPLPLEEIIELTKFDSSQLN
    N315            IFDKDKLLQSENRSIMFQKTMFPDQLKVIEIINLYQSFYENPLPLEEIIELTKFDSSQLN
    NCTC8325        IFDKDKLLQSENRSIMFQKTMFPDQLKVIEIINLYQSFYENPLPLEEIIELTKFDSSQLN
    Newman          IFDKDKLLQSENRSIMFQKTMFPDQLKVIEIINLYQSFYENPLPLEEIIELTKFDSSQLN
    USA300_FPR3757  IFDKDKLLQSENRSIMFQKTMFPDQLKVIEIINLYQSFYENPLPLEEIIELTKFDSSQLN
                    ************************************************************

    COL             QFVNKLSGGQQRLLDFVLSLIGQPQLILLDEPTSTMDIEIREYFWSIIENLKEDNRTILY
    N315            QFVNKLSGGQQRLLDFVLSLIGQPQLILLDEPTSTMDIEIREYFWSIIENLKEDNRTILY
    NCTC8325        QFVNKLSGGQQRLLDFVLSLIGQPQLILLDEPTSTMDIEIREYFWSIIENLKEDNRTILY
    Newman          QFVNKLSGGQQRLLDFVLSLIGQPQLILLDEPTSTMDIEIREYFWSIIENLKEDNRTILY
    USA300_FPR3757  QFVNKLSGGQQRLLDFVLSLIGQPQLILLDEPTSTMDIEIREYFWSIIENLKEDNRTILY
                    ************************************************************

    COL             TSHYIEEVERMSDKIILIENGEIILNDSTSHIRTNQQSQITLSDEYIRKLKLDKDDLVIQ
    N315            TSHYIEEVERMSDKIILIENGEIILNDSTSHIRTNQQSQITLSDEYIRKLKLDKDDLVIQ
    NCTC8325        TSHYIEEVERMSDKIILIENGEIILNDSTSHIRTNQQSQITLSDEYIRKLKLDKDDLVIQ
    Newman          TSHYIEEVERMSDKIILIENGEIILNDSTSHIRTNQQSQITLSDEYIRKLKLDKDDLVIQ
    USA300_FPR3757  TSHYIEEVERMSDKIILIENGEIILNDSTSHIRTNQQSQITLSDEYIRKLKLDKDDLVIQ
                    ************************************************************

    COL             KNHNGTIKIITSNVNDTILYLQQLHINLDDIEIQKVSIVDSYFNNKKQRGSNYDTKLLEN
    N315            KNHNGTIKIITSNVNDTILYLQQLHINLDDIEIQKVSIVDSYFNNKKQRGSNYDTKLLEN
    NCTC8325        KNHNGTIKIITSNVNDTILYLQQLHINLDDIEIQKVSIVDSYFNNKKQRGSNYDTKLLEN
    Newman          KNHNGTIKIITSNVNDTILYLQQLHINLDDIEIQKVSIVDSYFNNKKQRGSNYDTKLLEN
    USA300_FPR3757  KNHNGTIKIITSNVNDTILYLQQLHINLDDIEIQKVSIVDSYFNNKKQRGSNYDTKLLEN
                    ************************************************************

    COL             RI
    N315            RI
    NCTC8325        RI
    Newman          RI
    USA300_FPR3757  RI
                    **