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Summary[edit source | edit]

  • pan ID?: SAUPAN003707000
  • symbol?: katA
  • description?: catalase
  • strand?: +
  • coordinates?: 4011246..4012769
  • synteny block?: BlockID0027730
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1368 (kataA)
    N315:
    SA1170 (katA)
    NCTC8325:
    Newman:
    NWMN_1246 (katA)
    USA300_FPR3757:
    04-02981:
    SA2981_1289 (katA)
    08BA02176:
    C248_1370
    11819-97:
    MS7_1293 (katA)
    71193:
    ST398NM01_1336
    ECT-R 2:
    ECTR2_1193
    ED133:
    SAOV_1347
    ED98:
    SAAV_1314 (kataA)
    HO 5096 0412:
    SAEMRSA15_11810
    JH1:
    SaurJH1_1422
    JH9:
    SaurJH9_1395
    JKD6008:
    SAA6008_01300 (katE)
    JKD6159:
    SAA6159_01201 (katE)
    LGA251:
    SARLGA251_12430 (katA)
    M013:
    M013TW_1282
    MRSA252:
    SAR1344
    MSHR1132:
    SAMSHR1132_11790
    MSSA476:
    SAS1274
    Mu3:
    SAHV_1323 (katA)
    Mu50:
    SAV1334 (katA)
    MW2:
    MW1221 (katA)
    RF122:
    SAB1192
    ST398:
    SAPIG1336
    T0131:
    SAT0131_01405
    TCH60:
    HMPREF0772_11874 (kataA)
    TW20:
    SATW20_13360 (katA)
    USA300_TCH1516:
    USA300HOU_1277 (katA)
    VC40:
    SAVC_05910

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             ----------------------------------MQDIYFLEQMSQFDREVIPERRMHAK
    N315            MTMSQQDKKLTGVFGHPVSDRENSMTAGPRGPLLMQDIYFLEQMSQFDREVIPERRMHAK
    NCTC8325        ----------------------------------MQDIYFLEQMSQFDREVIPERRMHAK
    Newman          MTMSQQDKKLTGVFGHPVSDRENSMTAGPRGPLLMQDIYFLEQMSQFDREVIPERRMHAK
    USA300_FPR3757  --MSQQDKKLTGVFGHPVSDRENSMTAGPRGPLLMQDIYFLEQMSQFDREVIPERRMHAK
                                                      **************************

    COL             GSGAFGTFTVTKDITKYTNAKIFSEIGKQTEMFARFSTVAGERGAADAERDIRGFALKFY
    N315            GSGAFGTFTVTKDITKYTNAKIFSEIGKQTEMFARFSTVAGERGAADAERDIRGFALKFY
    NCTC8325        GSGAFGTFTVTKDITKYTNAKIFSEIGKQTEMFARFSTVAGERGAADAERDIRGFALKFY
    Newman          GSGAFGTFTVTKDITKYTNAKIFSEIGKQTEMFARFSTVAGERGAADAERDIRGFALKFY
    USA300_FPR3757  GSGAFGTFTVTKDITKYTNAKIFSEIGKQTEMFARFSTVAGERGAADAERDIRGFALKFY
                    ************************************************************

    COL             TEEGNWDLVGNNTPVFFFRDPKLFVSLNRAVKRDPRTNMRDAQNNWDFWTGLPEALHQVT
    N315            TEEGNWDLVGNNTPVFFFRDPKLFVSLNRAVKRDPRTNMRDAQNNWDFWTGLPEALHQVT
    NCTC8325        TEEGNWDLVGNNTPVFFFRDPKLFVSLNRAVKRDPRTNMRDAQNNWDFWTGLPEALHQVT
    Newman          TEEGNWDLVGNNTPVFFFRDPKLFVSLNRAVKRDPRTNMRDAQNNWDFWTGLPEALHQVT
    USA300_FPR3757  TEEGNWDLVGNNTPVFFFRDPKLFVSLNRAVKRDPRTNMRDAQNNWDFWTGLPEALHQVT
                    ************************************************************

    COL             ILMSDRGIPKDLRHMHGFGSHTYSMYNDSGERVWVKFHFRTQQGIENLTDEEAAEIIATD
    N315            ILMSDRGIPKDLRHMHGFGSHTYSMYNDSGERVWVKFHFRTQQGIENLTDEEAAEIIATD
    NCTC8325        ILMSDRGIPKDLRHMHGFGSHTYSMYNDSGERVWVKFHFRTQQGIENLTDEEAAEIIATD
    Newman          ILMSDRGIPKDLRHMHGFGSHTYSMYNDSGERVWVKFHFRTQQGIENLTDEEAAEIIATD
    USA300_FPR3757  ILMSDRGIPKDLRHMHGFGSHTYSMYNDSGERVWVKFHFRTQQGIENLTDEEAAEIIATD
                    ************************************************************

    COL             RDSSQRDLFEAIEKGDYPKWTMYIQVMTEEQAKNHKDNPFDLTKVWYHDEYPLIEVGEFE
    N315            RDSSQRDLFEAIEKGDYPKWTMYIQVMTEEQAKNHKDNPFDLTKVWYHDEYPLIEVGEFE
    NCTC8325        RDSSQRDLFEAIEKGDYPKWTMYIQVMTEEQAKNHKDNPFDLTKVWYHDEYPLIEVGEFE
    Newman          RDSSQRDLFEAIEKGDYPKWTMYIQVMTEEQAKNHKDNPFDLTKVWYHDEYPLIEVGEFE
    USA300_FPR3757  RDSSQRDLFEAIEKGDYPKWTMYIQVMTEEQAKNHKDNPFDLTKVWYHDEYPLIEVGEFE
                    ************************************************************

    COL             LNRNPDNYFMDVEQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQ
    N315            LNRNPDNYFMDVEQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQ
    NCTC8325        LNRNPDNYFMDVEQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQ
    Newman          LNRNPDNYFMDVEQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQ
    USA300_FPR3757  LNRNPDNYFMDVEQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQ
                    ************************************************************

    COL             PKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYN
    N315            PKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYN
    NCTC8325        PKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYN
    Newman          PKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYN
    USA300_FPR3757  PKGVGIENICPFSRDGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGYGYEYN
                    ************************************************************

    COL             QRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAMEGVTDDVKRRHIRHCYKADPEYGKG
    N315            QRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAMEGVTDDVKRRHIRHCYKADPEYGKG
    NCTC8325        QRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAMEGVTDDVKRRHIRHCYKADPEYGKG
    Newman          QRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAMEGVTDDVKRRHIRHCYKADPEYGKG
    USA300_FPR3757  QRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAMEGVTDDVKRRHIRHCYKADPEYGKG
                    ************************************************************

    COL             VAKALGIDINSIDLETENDETYENFEK
    N315            VAKALGIDINSIDLETENDETYENFEK
    NCTC8325        VAKALGIDINSIDLETENDETYENFEK
    Newman          VAKALGIDINSIDLETENDETYENFEK
    USA300_FPR3757  VAKALGIDINSIDLETENDETYENFEK
                    ***************************