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Summary[edit source | edit]

  • pan ID?: SAUPAN003787000
  • symbol?: opp-2B
  • description?: oligopeptide transporter permease

      descriptions from strain specific annotations:

    • oligopeptide transporter permease
    • binding-protein-dependent transport system inner membrane protein
    • peptide ABC transporter permease
    • ABC-type dipeptide/oligopeptide/nickel transport system, permease component
    • binding-protein-dependent transport system inner membrane component family protein
    • binding--dependent transport system inner membrane component family protein
    • oligopeptide permease, channel-forming protein
    • oligopeptide ABC transporter membrane protein
    • putative oligopeptide transport system permease
    • Putative oligopeptide transport system permease protein oppB2
    • oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein
    • oligopeptide transporter membrane permease domain
    • nickel transport system permease protein
    • oligopeptide ABC transporter permease
    • dipeptide/oligopeptide/nickel ABC transporter permease
    • oligopeptide membrane permease
  • strand?: -
  • coordinates?: 4081615..4082750
  • synteny block?: BlockID0028440
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    SA1214 (opp-2B)
    NCTC8325:
    Newman:
    USA300_FPR3757:
    SAUSA300_1276 (opp-2B)
    04-02981:
    SA2981_1336 (opp-2B)
    08BA02176:
    C248_1419
    11819-97:
    MS7_1339
    71193:
    ST398NM01_1382
    ECT-R 2:
    ECTR2_1239
    ED133:
    SAOV_1391c
    ED98:
    SAAV_1364
    HO 5096 0412:
    SAEMRSA15_12460
    JH1:
    SaurJH1_1472
    JH9:
    SaurJH9_1443
    JKD6008:
    SAA6008_01346 (opp-2B)
    JKD6159:
    SAA6159_01249 (opp-2B)
    LGA251:
    SARLGA251_12990
    M013:
    M013TW_1327
    MRSA252:
    SAR1395
    MSHR1132:
    SAMSHR1132_12240
    MSSA476:
    SAS1323
    Mu3:
    SAHV_1370
    Mu50:
    SAV1382
    MW2:
    MW1270 (opp-2B)
    RF122:
    SAB1237c
    ST398:
    SAPIG1382
    T0131:
    SAT0131_01453
    TCH60:
    HMPREF0772_11826
    TW20:
    SATW20_13810
    USA300_TCH1516:
    USA300HOU_1316
    VC40:
    SAVC_06155

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKL
    N315            MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKL
    NCTC8325        MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKL
    Newman          MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKL
    USA300_FPR3757  MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKL
                    ************************************************************

    COL             GLNDSLLVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIP
    N315            GLNDSLLVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIP
    NCTC8325        GLNDSLLVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIP
    Newman          GLNDSLLVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIP
    USA300_FPR3757  GLNDSLLVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIP
                    ************************************************************

    COL             LGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMNIDSVILSQFILPVIT
    N315            LGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMNIDSVILSQFILPVIT
    NCTC8325        LGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMNIDSVILSQFILPVIT
    Newman          LGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMNIDSVILSQFILPVIT
    USA300_FPR3757  LGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMNIDSVILSQFILPVIT
                    ************************************************************

    COL             LSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
    N315            LSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
    NCTC8325        LSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
    Newman          LSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
    USA300_FPR3757  LSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
                    ************************************************************

    COL             GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLL
    N315            GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLL
    NCTC8325        GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLL
    Newman          GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLL
    USA300_FPR3757  GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLL
                    ************************************************************

    COL             DPKQRLQLGNPKIKTNTPLISESSDRHA
    N315            DPKQRLQLGNPKNKTNTPLISESSDRHA
    NCTC8325        DPKQRLQLGNPKIKTNTPLISESSDRHA
    Newman          DPKQRLQLGNPKIKTNTPLISESSDRHA
    USA300_FPR3757  DPKQRLQLGNPKIKTNTPLISESSDRHA
                    ************ ***************