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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN003802000
  • symbol?:
  • description?: transposase

      descriptions from strain specific annotations:

    • transposase
    • putative transposase
    • pseudogene
    • truncated transposase
    • transposase for IS1272
    • truncated IS1272 transposase
    • putative transposase for IS1272
  • strand?: +
  • coordinates?: 4092514..4092811
  • synteny block?: BlockID0028590
  • occurrence?: in 66% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    SA1222 (truncated-SA)
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1344
    08BA02176:
    C248_1429
    11819-97:
    71193:
    ST398NM01_1391
    ECT-R 2:
    ECTR2_1247
    ED133:
    ED98:
    SAAV_1372
    HO 5096 0412:
    JH1:
    SaurJH1_1480
    JH9:
    SaurJH9_1451
    JKD6008:
    SAA6008_01354
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    SAS1331
    Mu3:
    SAHV_1378
    Mu50:
    SAV1390
    MW2:
    MW1278 (tnp)
    RF122:
    ST398:
    SAPIG1391
    T0131:
    SAT0131_01463 (bioB)
    TCH60:
    TW20:
    SATW20_13890
    USA300_TCH1516:
    USA300HOU_1325
    VC40:
    SAVC_06195

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKYIKAQINQKLSEPETKKIYSHRKIYVEPVFGFMKAILGFTRMSVRGINKVKRELGFVL
    N315            MKYIKAQINQKLSEPETKKIYSHRKIYVEPVFGFMKVILGFTRMSVRGINKVKRELGFVL
    NCTC8325        MKYIKAQINQKLSEPETKKIYSHRKIYVEPVFGFMKAILGFTRMSVRGINKVKRELGFVL
    Newman          MKYIKAQINQKLSEPETKKIYSHRKIYVEPVFGFMKAILGFTRMSVRGINKVKRELGFVL
                    ************************************.***********************

    COL             MALNIRKIAAQRAVHYKIHIKKADFHQIINRNQLFYIA
    N315            MALNIRKIAAQRAVHYKIHIKKANFHQIINRNQLFYIA
    NCTC8325        MALNIRKIAAQRAVHYKIHIKKADFHQIINRNQLFYIA
    Newman          MALNIRKIAAQRAVHYKIHIKKADFHQIINRNQLFYIA
                    ***********************:**************