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Summary[edit source | edit]

  • pan ID?: SAUPAN003813000
  • symbol?: lysA
  • description?: diaminopimelate decarboxylase
  • strand?: +
  • coordinates?: 4104167..4105432
  • synteny block?: BlockID0028700
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1435 (lysA)
    N315:
    SA1232 (lysA)
    NCTC8325:
    Newman:
    NWMN_1311 (lysA)
    USA300_FPR3757:
    04-02981:
    SA2981_1354 (lysA)
    08BA02176:
    C248_1439 (lysA)
    11819-97:
    MS7_1356 (lysA)
    71193:
    ST398NM01_1401
    ECT-R 2:
    ECTR2_1257 (lysA)
    ED133:
    SAOV_1409 (lysA)
    ED98:
    SAAV_1383 (lysA)
    HO 5096 0412:
    SAEMRSA15_12630 (lysA)
    JH1:
    SaurJH1_1490
    JH9:
    SaurJH9_1461
    JKD6008:
    SAA6008_01364 (lysA)
    JKD6159:
    SAA6159_01266 (lysA)
    LGA251:
    SARLGA251_13160 (lysA)
    M013:
    M013TW_1344
    MRSA252:
    SAR1412 (lysA)
    MSHR1132:
    SAMSHR1132_12410
    MSSA476:
    SAS1341
    Mu3:
    SAHV_1388 (lysA)
    Mu50:
    SAV1400 (lysA)
    MW2:
    MW1288 (lysA)
    RF122:
    SAB1255 (lysA)
    ST398:
    SAPIG1401 (lysA)
    T0131:
    SAT0131_01475
    TCH60:
    HMPREF0772_11809 (lysA)
    TW20:
    SATW20_13990 (lysA)
    USA300_TCH1516:
    USA300HOU_1335 (lysA2)
    VC40:
    SAVC_06245

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTVKYNQNGELTMDGISLKTIAQSFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYA
    N315            MTVKYNQNGELTMDGISLKTIAQSFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYA
    NCTC8325        MTVKYNQNGELTMDGISLKTIAQSFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYA
    Newman          MTVKYNQNGELTMDGISLKTIAQNFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYA
    USA300_FPR3757  MTVKYNQNGELTMDGISLKTIAQSFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYA
                    ***********************.************************************

    COL             SKAFTCIQMVKLVAEEDLQLDVVSEGELYTALEAGFEPSRIHFHGNNKTKHEIRYALENN
    N315            SKAFTCIQMVKLVAEEDLQLDVVSEGELYTALEAGFEPSRIHFHGNNKTKHEIRYALENN
    NCTC8325        SKAFTCIQMVKLVAEEDLQLDVVSEGELYTALEAGFEPSRIHFHGNNKTKHEIRYALENN
    Newman          SKAFTCIQMVKLVAEEDLQLDVVSEGELYTALEAGFEPSRIHFHGNNKTKHEIRYALENN
    USA300_FPR3757  SKAFTCIQMVKLVAEEDLQLDVVSEGELYTALEAGFEPSRIHFHGNNKTKHEIRYALENN
                    ************************************************************

    COL             IGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEFIQTGQEDSKFGLSIQYGLAK
    N315            IGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEFIQTGQEDSKFGLSIQYGLAK
    NCTC8325        IGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEFIQTGQEDSKFGLSIQYGLAK
    Newman          IGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEFIQTGQEDSKFGLSIQYGLAK
    USA300_FPR3757  IGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEFIQTGQEDSKFGLSIQYGLAK
                    ************************************************************

    COL             KAIDKVQQSKHLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGI
    N315            KAIDKVQQSKHLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGI
    NCTC8325        KAIDKVQQSKHLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGI
    Newman          KAIDKVQQSKHLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGI
    USA300_FPR3757  KAIDKVQQSKHLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGI
                    ************************************************************

    COL             KYVEGDESFPIESGIKDITDAIKSEIKVLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKE
    N315            KYVEGDESFPIESGIKDITDAIKSEIKVLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKE
    NCTC8325        KYVEGDESFPIESGIKDITDAIKSEIKVLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKE
    Newman          KYVEGDESFPIESGIKDITDAIKSEIKVLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKE
    USA300_FPR3757  KYVEGDESFPIESGIKDITDAIKSEIKVLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKE
                    ************************************************************

    COL             IPEINKYVSIDGGMSDHIRTALYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAK
    N315            IPEINKYVSIDGGMSDHIRTALYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAK
    NCTC8325        IPEINKYVSIDGGMSDHIRTALYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAK
    Newman          IPEINKYVSIDGGMSDHIRTALYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAK
    USA300_FPR3757  IPEINKYVSIDGGMSDHIRTALYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAK
                    ************************************************************

    COL             LPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKDGKAREVIKRQSLRQLIINDT
    N315            LPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKDGKAREVIKRQSLRQLIINDT
    NCTC8325        LPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKDGKAREVIKRQSLRQLIINDT
    Newman          LPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKDGKAREVIKRQSLRQLIINDT
    USA300_FPR3757  LPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKDGKAREVIKRQSLRQLIINDT
                    ************************************************************

    COL             K
    N315            K
    NCTC8325        K
    Newman          K
    USA300_FPR3757  K
                    *