From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN003924000
  • symbol?: aroA
  • description?: 3-phosphoshikimate 1-carboxyvinyltransferase

      descriptions from strain specific annotations:

    • 3-phosphoshikimate 1-carboxyvinyltransferase
    • 5-Enolpyruvylshikimate-3-phosphate synthase
    • AroF
  • strand?: -
  • coordinates?: 4244786..4246084
  • synteny block?: BlockID0029700
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1504 (aroA)
    N315:
    SA1297 (aroA)
    NCTC8325:
    Newman:
    NWMN_1375 (aroA)
    USA300_FPR3757:
    04-02981:
    SA2981_1420 (aroA)
    08BA02176:
    C248_1504 (aroA)
    11819-97:
    MS7_1420
    71193:
    ST398NM01_1464
    ECT-R 2:
    ECTR2_1318 (aroA)
    ED133:
    SAOV_1472 (aroA)
    ED98:
    SAAV_1451 (aroA)
    HO 5096 0412:
    SAEMRSA15_13250 (aroA)
    JH1:
    SaurJH1_1552
    JH9:
    SaurJH9_1523
    JKD6008:
    SAA6008_01433 (aroA)
    JKD6159:
    SAA6159_01329 (aroA)
    LGA251:
    SARLGA251_13780 (aroA)
    M013:
    M013TW_1412
    MRSA252:
    SAR1475 (aroA)
    MSHR1132:
    SAMSHR1132_13040
    MSSA476:
    SAS1407
    Mu3:
    SAHV_1452 (aroA)
    Mu50:
    SAV1464 (aroA)
    MW2:
    MW1354 (aroA)
    RF122:
    SAB1328c (aroA)
    ST398:
    SAPIG1464 (aroA)
    T0131:
    SAT0131_01553 (set1nm)
    TCH60:
    HMPREF0772_11740 (aroA)
    TW20:
    SATW20_14630 (aroA)
    USA300_TCH1516:
    USA300HOU_1402 (aroA)
    VC40:
    SAVC_06575

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MVNEQIIDISGPLKGEIEVPGDKSMTHRAIMLASLAEGVSTIYKPLLGEDCRRTMDIFRL
    N315            MVSEQIIDISGPLKGEIEVPGDKSMTHRAIMLASLAEGTSNIYKPLLGEDCRRTMDIFRL
    NCTC8325        MVNEQIIDISGPLKGEIEVPGDKSMTHRAIMLASLAEGVSTIYKPLLGEDCRRTMDIFRL
    Newman          MVNEQIIDISGPLKGEIEVPGDKSMTHRAIMLASLAEGVSTIYKPLLGEDCRRTMDIFRL
    USA300_FPR3757  MVNEQIIDISGPLKGEIEVPGDKSMTHRAIMLASLAEGVSTIYKPLLGEDCRRTMDIFRL
                    **.***********************************.*.*******************

    COL             LGVEIKEDDEKLVVTSPGYQSFNTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSI
    N315            LGVDIKEDEDKLVVNSPGYKAFKTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSI
    NCTC8325        LGVEIKEDDEKLVVTSPGYQSFNTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSI
    Newman          LGVEIKEDDEKLVVTSPGYQSFNTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSI
    USA300_FPR3757  LGVEIKEDDEKLVVTSPGYQSFNTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSI
                    ***:****::****.****::*:*************************************

    COL             GKRPMDRVLRPLKLMDANIEGIEDNYTPLIIKPSVIKGINYQMEVASAQVKSAILFASLF
    N315            GKRPMDRVLRPLKLMDANIEGIEDNYTPLIIKPSVIKGINYQMEVASAQVKSAILFASLF
    NCTC8325        GKRPMDRVLRPLKLMDANIEGIEDNYTPLIIKPSVIKGINYQMEVASAQVKSAILFASLF
    Newman          GKRPMDRVLRPLKLMDANIEGIEDNYTPLIIKPSVIKGINYQMEVASAQVKSAILFASLF
    USA300_FPR3757  GKRPMDRVLRPLKLMDANIEGIEDNYTPLIIKPSVIKGINYQMEVASAQVKSAILFASLF
                    ************************************************************

    COL             SKEPTIIKELDVSRNHTETMFKHFNIPIEAEGLSINTTPEAIRYIKPADFHVPGDISSAA
    N315            SNDTTVIKELDVSRNHTETMFRHFNIPIEAERLSITTTPDAIQHIKPADFHVPGDISSAA
    NCTC8325        SKEPTIIKELDVSRNHTETMFKHFNIPIEAEGLSINTTPEAIRYIKPADFHVPGDISSAA
    Newman          SKEPTIIKELDVSRNHTETMFKHFNIPIEAEGLSINTTPEAIRYIKPADFHVPGDISSAA
    USA300_FPR3757  SKEPTIIKELDVSRNHTETMFKHFNIPIEAEGLSINTTPEAIRYIKPADFHVPGDISSAA
                    *::.*:***************:********* ***.***:**::****************

    COL             FFIVAALITPGSDVTIHNVGINPTRSGIIDIVEKMGGNIQLFNQTTGAEPTASIRIQYTP
    N315            FFIVAALITPESDVTIHNVGINPTRSGIIDIVEKMGGNIQLFNQTTGAEPTASIRIQYTP
    NCTC8325        FFIVAALITPGSDVTIHNVGINPTRSGIIDIVEKMGGNIQLFNQTTGAEPTASIRIQYTP
    Newman          FFIVAALITPGSDVTIHNVGINPTRSGIIDIVEKMGGNIQLFNQTTGAEPTASIRIQYTP
    USA300_FPR3757  FFIVAALITPGSDVTIHNVGINPTRSGIIDIVEKMGGNIQLFNQTTGAEPTASIRIQYTP
                    ********** *************************************************

    COL             MLQPITIEGELVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNLLG
    N315            MLQPITIEGELVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNLLG
    NCTC8325        MLQPITIEGELVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNLLG
    Newman          MLQPITIEGELVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNLLG
    USA300_FPR3757  MLQPITIEGELVPKAIDELPVIALLCTQAVGTSTIKDAEELKVKETNRIDTTADMLNLLG
                    ************************************************************

    COL             FELQPTNDGLIIYPSEFKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVSFPG
    N315            FELQPTNDGLIIHPSEFKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVSFPG
    NCTC8325        FELQPTNDGLIIHPSEFKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVSFPG
    Newman          FELQPTNDGLIIHPSEFKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVSFPG
    USA300_FPR3757  FELQPTNDGLIIHPSEFKTNATVDSLTDHRIGMMLAVASLLSSEPVKIKQFDAVNVSFPG
                    ************:***********************************************

    COL             FLPKLKLLENEG
    N315            FLPKLKLLENEG
    NCTC8325        FLPKLKLLENEG
    Newman          FLPKLKLLENEG
    USA300_FPR3757  FLPKLKLLENEG
                    ************