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Summary[edit source | edit]

  • pan ID?: SAUPAN004073000
  • symbol?: lpdA
  • description?: dihydrolipoamide dehydrogenase

      descriptions from strain specific annotations:

    • dihydrolipoamide dehydrogenase
    • Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase
    • dihydrolipoyl dehydrogenase
    • putative dihydrolipoamide dehydrogenase
    • 2-oxoisovalerate dehydrogenase, E3 component, lipoamide dehydrogenase
  • strand?: -
  • coordinates?: 4354449..4355870
  • synteny block?: BlockID0031050
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1563 (lpdA)
    N315:
    NCTC8325:
    Newman:
    NWMN_1424 (lpdA)
    USA300_FPR3757:
    04-02981:
    SA2981_1477
    08BA02176:
    C248_1561 (bfmBC)
    11819-97:
    MS7_1536
    71193:
    ST398NM01_1584
    ECT-R 2:
    ECTR2_1370 (lpdA)
    ED133:
    SAOV_1519 (lpdA)
    ED98:
    SAAV_1511 (lpdA)
    HO 5096 0412:
    SAEMRSA15_14390 (bfmBC)
    JH1:
    SaurJH1_1610
    JH9:
    SaurJH9_1577
    JKD6008:
    SAA6008_01488 (lpdA)
    JKD6159:
    SAA6159_01454 (lpdA)
    LGA251:
    SARLGA251_14250 (bfmBC)
    M013:
    M013TW_1534
    MRSA252:
    SAR1596 (bfmBC)
    MSHR1132:
    SAMSHR1132_13590
    MSSA476:
    SAS1457
    Mu3:
    SAHV_1506
    Mu50:
    SAV1518
    MW2:
    MW1471
    RF122:
    SAB1391c
    ST398:
    SAPIG1584 (lpdA)
    T0131:
    SAT0131_01612
    TCH60:
    HMPREF0772_11622 (lpd)
    TW20:
    SATW20_15150 (bfmBC)
    USA300_TCH1516:
    USA300HOU_1520 (lpdA)
    VC40:
    SAVC_06840

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV
    N315            MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV
    NCTC8325        MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV
    Newman          MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV
    USA300_FPR3757  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV
                    ************************************************************

    COL             FQTVKQAAMFGVDVKDANVNFENMLARKEDIINQMYQGVKHLMQHNHIDIYNGTGRILGT
    N315            FQTVKQAAMFGVDVKDANVNFENMLARKEDIINQMYQGVKHLMQHNHIDIYNGTGRILGT
    NCTC8325        FQTVKQAAMFGVDVKDANVNFENMLARKEDIINQMYQGVKHLMQHNHIDIYNGTGRILGT
    Newman          FQTVKQAAMFGVDVKDANVNFENMLARKEDIINQMYQGVKHLMQHNHIDIYNGTGRILGT
    USA300_FPR3757  FQTVKQAAMFGVDVKDANVNFENMLARKEDIINQMYQGVKHLMQHNHIDIYNGTGRILGT
                    ************************************************************

    COL             SIFSPQSGTISVEYEDGESDLLPNQFVLIATGSSPAELPFLSFDHDKILSSDDILSLKTL
    N315            SIFSPQSGTISVEYEDGESDLLPNQFVLIATGSSPAELPFLSFDHDKILSSDDILSLKTL
    NCTC8325        SIFSPQSGTISVEYEDGESDLLPNQFVLIATGSSPAELPFLSFDHDKILSSDDILSLKTL
    Newman          SIFSPQSGTISVEYEDGESDLLPNQFVLIATGSSPAELPFLSFDHDKILSSDDILSLKTL
    USA300_FPR3757  SIFSPQSGTISVEYEDGESDLLPNQFVLIATGSSPAELPFLSFDHDKILSSDDILSLKTL
                    ************************************************************

    COL             PSSIGIIGGGVIGMEFASLMIDLGVDVTVIEAGERILPTESKQASQLLKKSLSARGVKFY
    N315            PSSIGIIGGGVIGMEFASLMIDLGVDVTVIEAGERILPTESKQASQLLKKSLSARGVKFY
    NCTC8325        PSSIGIIGGGVIGMEFASLMIDLGVDVTVIEAGERILPTESKQASQLLKKSLSARGVKFY
    Newman          PSSIGIIGGGVIGMEFASLMIDLGVDVTVIEAGERILPTESKQASQLLKKSLSARGVKFY
    USA300_FPR3757  PSSIGIIGGGVIGMEFASLMIDLGVDVTVIEAGERILPTESKQASQLLKKSLSARGVKFY
                    ************************************************************

    COL             EGIKLSENDINVNEDGVTFEISSDIIKVDKVLLSIGRKPNTSDIGLNNTKIKLSTSGHIL
    N315            EGIKLSENDINVNEDGVTFEISSDIIKVDKVLLSIGRKPNTSDIGLNNTKIKLSTSGHIL
    NCTC8325        EGIKLSENDINVNEDGVTFEISSDIIKVDKVLLSIGRKPNTSDIGLNNTKIKLSTSGHIL
    Newman          EGIKLSENDINVNEDGVTFEISSDIIKVDKVLLSIGRKPNTSDIGLNNTKIKLSTSGHIL
    USA300_FPR3757  EGIKLSENDINVNEDGVTFEISSDIIKVDKVLLSIGRKPNTSDIGLNNTKIKLSTSGHIL
                    ************************************************************

    COL             TNEFQQTEDKHIYAAGDCIGKLQLAHVGSKEGVVAVDHMFEGNPIPVNYNMMPKCIYSQP
    N315            TNEFQQTEDKHIYAAGDCIGKLQLAHVGSKEGVVAVDHMFEGNPIPVNYNMMPKCIYSQP
    NCTC8325        TNEFQQTEDKHIYAAGDCIGKLQLAHVGSKEGVVAVDHMFEGNPIPVNYNMMPKCIYSQP
    Newman          TNEFQQTEDKHIYAAGDCIGKLQLAHVGSKEGVVAVDHMFEGNPIPVNYNMMPKCIYSQP
    USA300_FPR3757  TNEFQQTEDKHIYAAGDCIGKLQLAHVGSKEGVVAVDHMFEGNPIPVNYNMMPKCIYSQP
                    ************************************************************

    COL             EIASIGLNIEQAKAEGMKVKSFKVPFKAIGKAVIDSHDTNEGYSEMVIDQSTEEIVGINM
    N315            EIASIGLNIEQAKAEGMKVKSFKVPFKAIGKAVIDSHDANEGYSEMVIDQSTEEIVGINM
    NCTC8325        EIASIGLNIEQAKAEGMKVKSFKVPFKAIGKAVIDSHDTNEGYSEMVIDQSTEEIVGINM
    Newman          EIASIGLNIEQAKAEGMKVKSFKVPFKAIGKAVIDSHDTNEGYSEMVIDQSTEEIVGINM
    USA300_FPR3757  EIASIGLNIEQAKAEGMKVKSFKVPFKAIGKAVIDSHDTNEGYSEMVIDQSTEEIVGINM
                    **************************************:*********************

    COL             IGPHVTELINEASLLQFMNGSALELGLTTHAHPSISEVLMELGLKAESRAIHV
    N315            IGPHVTELINEASLLQFMNGSALELGLTTHAHPSISEVLMELGLKAESRAIHV
    NCTC8325        IGPHVTELINEASLLQFMNGSALELGLTTHAHPSISEVLMELGLKAESRAIHV
    Newman          IGPHVTELINEASLLQFMNGSALELGLTTHAHPSISEVLMELGLKAESRAIHV
    USA300_FPR3757  IGPHVTELINEASLLQFMNGSALELGLTTHAHPSISEVLMELGLKAESRAIHV
                    *****************************************************