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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN004093000
  • symbol?:
  • description?: traG protein

      descriptions from strain specific annotations:

    • traG protein
    • putative traG membrane protein
    • Secretory antigen SsaA-like protein transposon-related protein
  • strand?: -
  • coordinates?: 4370014..4371000
  • synteny block?: BlockID0031230
  • occurrence?: in 28% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    SAEMRSA15_12370
    JH1:
    JH9:
    JKD6008:
    SAA6008_02633
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR1290
    MSHR1132:
    SAMSHR1132_15370
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    SAT0131_02808
    TCH60:
    TW20:
    SATW20_27150
    USA300_TCH1516:
    USA300HOU_0628
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MVNKKDIAKKVIGKTPIGVKLKLAKVIIILCVVAFFTFPVIVMFLLAPDLNKGKDDAGCT
    USA300_FPR3757  MVNKKDIAKKVIGKTPIGVKLKLAKVIIILCVVAFFIFPVIIMFLLAPDLNKGKDDAGCT
                    ************************************ ****:******************

    COL             VSGGNVSANGIDKFNENAKGGKLEGKGKEIQKIAEKNKVPVNIFMAIIASESQWGKGENA
    USA300_FPR3757  VSGGNVSANGIDKFNENAKGGKLEGKGKEIQKIAEKNKVPVNIFMAIIASESQWGKGENA
                    ************************************************************

    COL             TRQNNPLSVMGSKSIHDSTYPTIEDGLNAGAKNLYDVYISKGLDTPKKIGPKYAPVGASN
    USA300_FPR3757  TRQNNPLSVMGSKSIHDSTYPTIEDGLNAGAKNLYDVYISKGLDTPKKIGPKYAPVGASN
                    ************************************************************

    COL             DPNNMNARWIPTVEKIMKDLGGSEAKTSCSNGKGKSIKFNGKLPHWSNDDPGKGNLYTAG
    USA300_FPR3757  DPNNMNARWIPTVEKIMKDLGGSEAKTSCSNGKGKSIKFNGKLPHWSNDDPGKGNLYTAG
                    ************************************************************

    COL             QCTWYAYGMRQKMGKPVSTYWHDAHKWNDRAKAEGYKVDKNPEPGALFIAEQGAGGHDGH
    USA300_FPR3757  QCTWYAYGMRQKMGKPVSTYWHDAHKWNDRAKAEGYKVDKNPEPGALFIAEQGAGGHDGH
                    ************************************************************

    COL             YGHVAVVIGVSDGGKTFRITEMNWEGAFKVNERTLKMTDGYSFIHDKE
    USA300_FPR3757  YGHVAVVIGVSDGGKTFRITEMNWEGAFKVNERTLKMTDGYSFIHDKE
                    ************************************************