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Summary[edit source | edit]

  • pan ID?: SAUPAN004143000
  • symbol?: dnaG
  • description?: DNA primase
  • strand?: -
  • coordinates?: 4411501..4413320
  • synteny block?: BlockID0031730
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1619 (dnaG)
    N315:
    SA1391 (dnaG)
    NCTC8325:
    Newman:
    NWMN_1465 (dnaG)
    USA300_FPR3757:
    04-02981:
    SA2981_1520 (dnaG)
    08BA02176:
    C248_1605 (dnaG)
    11819-97:
    MS7_1579 (dnaG)
    71193:
    ST398NM01_1627
    ECT-R 2:
    ECTR2_1412 (dnaG)
    ED133:
    SAOV_1562
    ED98:
    SAAV_1554 (dnaG)
    HO 5096 0412:
    SAEMRSA15_14820 (dnaG)
    JH1:
    SaurJH1_1654
    JH9:
    SaurJH9_1620
    JKD6008:
    SAA6008_01531 (dnaG)
    JKD6159:
    SAA6159_01497 (dnaG)
    LGA251:
    SARLGA251_14680 (dnaG)
    M013:
    M013TW_1577
    MRSA252:
    SAR1639 (dnaG)
    MSHR1132:
    SAMSHR1132_14020
    MSSA476:
    SAS1500
    Mu3:
    SAHV_1549 (dnaG)
    Mu50:
    SAV1562 (dnaG)
    MW2:
    MW1514 (dnaG)
    RF122:
    SAB1434c (dnaG)
    ST398:
    SAPIG1627
    T0131:
    SAT0131_01657
    TCH60:
    HMPREF0772_11578 (dnaG)
    TW20:
    SATW20_15580 (dnaG)
    USA300_TCH1516:
    USA300HOU_1564 (dnaG)
    VC40:
    SAVC_07060

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRNYIGLCPFHDEKTPSFTVSEDKQICHCF
    N315            MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRNYIGLCPFHDEKTPSFTVSEDKQICHCF
    NCTC8325        MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRNYIGLCPFHDEKTPSFTVSEDKQICHCF
    Newman          MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRNYIGLCPFHDEKTPSFTVSEDKQICHCF
    USA300_FPR3757  MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRNYIGLCPFHDEKTPSFTVSEDKQICHCF
                    ************************************************************

    COL             GCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQMIEMHE
    N315            GCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQMIEMHE
    NCTC8325        GCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQMIEMHE
    Newman          GCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQMIEMHE
    USA300_FPR3757  GCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQMIEMHE
                    ************************************************************

    COL             LIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIE
    N315            LIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIE
    NCTC8325        LIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIE
    Newman          LIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIE
    USA300_FPR3757  LIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIE
                    ************************************************************

    COL             LAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYTGQEPKYLNSPETPIF
    N315            LAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYTGQEPKYLNSPETPIF
    NCTC8325        LAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYTGQEPKYLNSPETPIF
    Newman          LAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYTGQEPKYLNSPETPIF
    USA300_FPR3757  LAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYTGQEPKYLNSPETPIF
                    ************************************************************

    COL             QKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRK
    N315            QKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRK
    NCTC8325        QKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRK
    Newman          QKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRK
    USA300_FPR3757  QKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRK
                    ************************************************************

    COL             LTSNITLMFDGDFAGSEATLKTGQNLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTAFV
    N315            LTSNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTTFV
    NCTC8325        LTSNITLMFDGDFAGSEATLKTGQNLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTAFV
    Newman          LTSNITLMFDGDFAGSEATLKTGQNLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTAFV
    USA300_FPR3757  LTSNITLMFDGDFAGSEATLKTGQNLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTAFV
                    ************************:********************************:**

    COL             KNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKALNDVAPFFNVS
    N315            KNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKAINDVAPFFNVS
    NCTC8325        KNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKALNDVAPFFNVS
    Newman          KNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKALNDVAPFFNVS
    USA300_FPR3757  KNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKALNDVAPFFNVS
                    *************************************************:**********

    COL             PEQLANEIQFNQAPANYYPE------DEYGGYIEPEPIGMAQFDNLSRQEKAERAFLKHL
    N315            PEQLANEIQFNQAPANYYPEDEYGGYDEYGGYIEPEPIGMAQFDNLSRQEKAERAFLKHL
    NCTC8325        PEQLANEIQFNQAPANYYPE------DEYGGYIEPEPIGMAQFDNLSRQEKAERAFLKHL
    Newman          PEQLANEIQFNQAPANYYPE------DEYGGYIEPEPIGMAQFDNLSRQEKAERAFLKHL
    USA300_FPR3757  PEQLANEIQFNQAPANYYPE------DEYGGYIEPEPIGMAQFDNLSRQEKAERAFLKHL
                    ********************      **********************************

    COL             MRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISDAVQYVNSNELRETLI
    N315            MRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISDAVQYVNSNELRETLI
    NCTC8325        MRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISDAVQYVNSNELRETLI
    Newman          MRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISDAVQYVNSNELRETLI
    USA300_FPR3757  MRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISDAVQYVNSNELRETLI
                    ************************************************************

    COL             SLEQYNLNDEPYENEIDDYVNVINEKGQETIESLNHKLREATRIGDVELQKYYLQQIVAK
    N315            SLEQYNLNDEPYENEIDDYVNVINEKGQETIESLNHKLREATRIGDVELQKYYLQQIVAK
    NCTC8325        SLEQYNLNDEPYENEIDDYVNVINEKGQETIESLNHKLREATRIGDVELQKYYLQQIVAK
    Newman          SLEQYNLNDEPYENEIDDYVNVINEKGQETIESLNHKLREATRIGDVELQKYYLQQIVAK
    USA300_FPR3757  SLEQYNLNDEPYENEIDDYVNVINEKGQETIESLNHKLREATRIGDVELQKYYLQQIVAK
                    ************************************************************

    COL             NKERM
    N315            NKERM
    NCTC8325        NKERM
    Newman          NKERM
    USA300_FPR3757  NKERM
                    *****