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Summary[edit source | edit]

  • pan ID?: SAUPAN004182000
  • symbol?: aroE
  • description?: shikimate 5-dehydrogenase

      descriptions from strain specific annotations:

    • shikimate 5-dehydrogenase
    • Shikimate 5-dehydrogenase I alpha
    • AroDI alpha
    • shikimate dehydrogenase
  • strand?: -
  • coordinates?: 4443866..4444621
  • synteny block?: BlockID0032120
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1652 (aroE)
    N315:
    SA1424 (aroE)
    NCTC8325:
    Newman:
    NWMN_1498 (aroE)
    USA300_FPR3757:
    04-02981:
    SA2981_1554 (aroE)
    08BA02176:
    C248_1638 (aroE)
    11819-97:
    MS7_1613 (aroE)
    71193:
    ST398NM01_1661
    ECT-R 2:
    ECTR2_1445 (aroE)
    ED133:
    SAOV_1595
    ED98:
    SAAV_1587 (aroE)
    HO 5096 0412:
    SAEMRSA15_15150 (aroE)
    JH1:
    SaurJH1_1688
    JH9:
    SaurJH9_1653
    JKD6008:
    SAA6008_01566 (aroE)
    JKD6159:
    SAA6159_01531 (aroE)
    LGA251:
    SARLGA251_15010 (aroE)
    M013:
    M013TW_1610
    MRSA252:
    SAR1673 (aroE)
    MSHR1132:
    SAMSHR1132_14350
    MSSA476:
    SAS1533
    Mu3:
    SAHV_1583 (aroE)
    Mu50:
    SAV1596 (aroE)
    MW2:
    MW1547 (aroE)
    RF122:
    SAB1468c (aroE)
    ST398:
    SAPIG1661 (aroE)
    T0131:
    SAT0131_01691
    TCH60:
    HMPREF0772_11545 (aroE)
    TW20:
    SATW20_15920 (aroE)
    USA300_TCH1516:
    USA300HOU_1597 (aroE)
    VC40:
    SAVC_07235

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELEGFNIT
    N315            MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELDGFNIT
    NCTC8325        MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELEGFNIT
    Newman          MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELEGFNIT
    USA300_FPR3757  MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELEGFNIT
                    ******************************************************:*****

    COL             IPHKERIIPYLDYVDEQAINAGAVNTVLIKDGKWIGYNTDGIGYVKGLHSVYPDLENAYI
    N315            IPHKERIIPYLDYVDEQAINAGAVNTVLIKDGKWIGYNTDGIGYVKGLHSVYPDLENAYI
    NCTC8325        IPHKERIIPYLDYVDEQAINAGAVNTVLIKDGKWIGYNTDGIGYVKGLHSVYPDLENAYI
    Newman          IPHKERIIPYLDYVDEQAINAGAVNTVLIKDGKWIGYNTDGIGYVKGLHSVYPDLENAYI
    USA300_FPR3757  IPHKERIIPYLDYVDEQAINAGAVNTVLIKDGKWIGYNTDGIGYVKGLHSVYPDLENAYI
                    ************************************************************

    COL             LILGAGGASKGIAYELAKFVKPKLTVANRTMARFESWNLNINQISLADAEKYLAEFDIVI
    N315            LILGAGGASKGIAYELAKFVKPKLTVANRTMARFESWNLNINQISLADAEKYLAEFDIVI
    NCTC8325        LILGAGGASKGIAYELAKFVKPKLTVANRTMARFESWNLNINQISLADAEKYLAEFDIVI
    Newman          LILGAGGASKGIAYELAKFVKPKLTVANRTMARFESWNLNINQISLADAEKYLAEFDIVI
    USA300_FPR3757  LILGAGGASKGIAYELAKFVKPKLTVANRTMARFESWNLNINQISLADAEKYLAEFDIVI
                    ************************************************************

    COL             NTTPAGMAGNNESIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQG
    N315            NTTPAGMAGNNESIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQG
    NCTC8325        NTTPAGMAGNNESIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQG
    Newman          NTTPAGMAGNNESIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQG
    USA300_FPR3757  NTTPAGMAGNNESIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQG
                    ************************************************************

    COL             AESFKIWTNKDADINSMKTAVLQQLKGE
    N315            AESFKIWTNKDADINSMKTAVLQQLKGE
    NCTC8325        AESFKIWTNKDADINSMKTAVLQQLKGE
    Newman          AESFKIWTNKDADINSMKTAVLQQLKGE
    USA300_FPR3757  AESFKIWTNKDADINSMKTAVLQQLKGE
                    ****************************