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Summary[edit source | edit]

  • pan ID?: SAUPAN004405000
  • symbol?:
  • description?: smooth muscle caldesmon

      descriptions from strain specific annotations:

    • smooth muscle caldesmon
    • Maebl
  • strand?: -
  • coordinates?: 4645551..4648339
  • synteny block?: BlockID0034090
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1696
    08BA02176:
    C248_1783
    11819-97:
    MS7_1744
    71193:
    ST398NM01_1791
    ECT-R 2:
    ECTR2_1578
    ED133:
    SAOV_1724
    ED98:
    SAAV_1748
    HO 5096 0412:
    SAEMRSA15_16460
    JH1:
    SaurJH1_1828
    JH9:
    SaurJH9_1793
    JKD6008:
    SAA6008_01709
    JKD6159:
    SAA6159_01661
    LGA251:
    SARLGA251_16280
    M013:
    M013TW_1752
    MRSA252:
    SAR1816
    MSHR1132:
    SAMSHR1132_15880
    MSSA476:
    SAS1664
    Mu3:
    SAHV_1724
    Mu50:
    SAV1738
    MW2:
    MW1681
    RF122:
    SAB1598c
    ST398:
    SAPIG1791
    T0131:
    SAT0131_01846
    TCH60:
    HMPREF0772_11415
    TW20:
    SATW20_17280
    USA300_TCH1516:
    USA300HOU_1728
    VC40:
    SAVC_07900

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTQQQNDKRTLKNKHTYQNEPLPNRKDFVVSFITGALVGSALGLYFKNKVYQKADDLKVK
    N315            MTQQQNDKRTLKNKHTYQNEPLPNRKDFVVSFITGALVGSALGLYFKNKVYQKADDLKVK
    NCTC8325        MTQQQNDKRTLKNKHTYQNEPLPNRKDFVVSFITGALVGSALGLYFKNKVYQKADDLKVK
    Newman          MTQQQNDKRTLKNKHTYQNEPLPNRKDFVVSFITGALVGSALGLYFKNKVYQKADDLKVK
    USA300_FPR3757  MTQQQNDKRTLKNKHTYQNEPLPNRKDFVVSFITGALVGSALGLYFKNKVYQKADDLKVK
                    ************************************************************

    COL             EQELSQKFEERKTQLEETVAYTKERVEGFLNKSKNEQAALKAQQAAIKEEASANNLSDTS
    N315            EQELSQKFEERKTQLEETVAYTKERVEGFLNKSKNEQAALKAQQAAIKEEASANNLSDTS
    NCTC8325        EQELSQKFEERKTQLEETVAYTKERVEGFLNKSKNEQAALKAQQAAIKEEASANNLSDTS
    Newman          EQELSQKFEERKTQLEETVAYTKERVEGFLNKSKNEQAALKAQQAAIKEEASANNLSDTS
    USA300_FPR3757  EQELSQKFEERKTQLEETVAYTKERVEGFLNKSKNEQAALKAQQAAIKEEASANNLSDTS
                    ************************************************************

    COL             QEAQEIQEAKREAQAEADKSVAVSNKESKAVALKAQQAAIKEEASANNLSDTSQEAQEIQ
    N315            QEAQEIQEAKREAQAEADKSVAVSNEESKASALKVQQAAIKEEASANNLSDTSQEAQEI-
    NCTC8325        QEAQEIQEAKREAQAEADKSVAVSNKESKAVALKAQQAAIKEEASANNLSDTSQEAQEIQ
    Newman          QEAQEIQEAKREAQAEADKSVAVSNKESKAVALKAQQAAIKEEASANNLSDTSQEAQEIQ
    USA300_FPR3757  QEAQEI------------------------------------------------------
                    ******                                                      

    COL             EAKKEAQAETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDTSQEAQEVQEAKKEAQ
    N315            ----------------------------------------------------QEAKKEAQ
    NCTC8325        EAKKEAQAETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDTSQEAQEVQEAKKEAQ
    Newman          EAKKEAQAETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDTSQEAQEVQEAKKEAQ
    USA300_FPR3757  ----------------------------------------------------QEAKKEAQ
                                                                        ********

    COL             AETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDISQEAQEVQEAKKEAQAEKDSDT
    N315            AETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDTSQEAQEVQEAKKEAQAEKDSDT
    NCTC8325        AETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDISQEAQEVQEAKKEAQAEKDSDT
    Newman          AETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDISQEAQEVQEAKKEAQAEKDSDT
    USA300_FPR3757  AETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDISQEAQEVQEAKKEAQAEKDSDT
                    ************************************* **********************

    COL             LTKDASAAKVEVSKPESQAERLANAAKQKQAKLTPGSKESQLTEALFAEKPVAKNDLKEI
    N315            STKDASAAKVEVSKPESQAERLANAAKQKQAKLTPGSKESQLTEALFAEKPVAKNDLKEI
    NCTC8325        LTKDASAAKVEVSKPESQAERLANAAKQKQAKLTPGSKESQLTEALFAEKPVAKNDLKEI
    Newman          LTKDASAAKVEVSKPESQAERLANAAKQKQAKLTPGSKESQLTEALFAEKPVAKNDLKEI
    USA300_FPR3757  LTKDASAAKVEVSKPESQAERLANAAKQKQAKLTPGSKESQLTEALFAEKPVAKNDLKEI
                     ***********************************************************

    COL             PQLVTKKNDVSETETVNIDNKDTVKQKEAKFENGVITRKADEKTTNNTAVDKKSGKQSKK
    N315            PQLVTKKNDVSETETVNIDNKDTVKQKEAKFENGVITRKADEKTTNNTAVDKKSGKQSKK
    NCTC8325        PQLVTKKNDVSETETVNIDNKDTVKQKEAKFENGVITRKADEKTTNNTAVDKKSGKQSKK
    Newman          PQLVTKKNDVSETETVNIDNKDTVKQKEAKFENGVITRKADEKTTNNTAVDKKSGKQSKK
    USA300_FPR3757  PQLVTKKNDVSETETVNIDNKDTVKQKEAKFENGVITRKADEKTTNNTAVDKKSGKQSKK
                    ************************************************************

    COL             TTPSNKRNASKASTNKTSGQKKQHNKKSSQGAKKQSSSSKSTQKNNQTSNKNSKTTNAKS
    N315            TTPSNKRNASKASTNKTSGQKKQHNKKSSQGAKKQSSSSKLTQKNNQTSNKNSKTTNAKS
    NCTC8325        TTPSNKRNASKASTNKTSGQKKQHNKKSSQGAKKQSSSSKSTQKNNQTSNKNSKTTNAKS
    Newman          TTPSNKRNASKASTNKTSGQKKQHNKKSSQGAKKQSSSSKSTQKNNQTSNKNSKTTNAKS
    USA300_FPR3757  TTPSNKRNASKASTNKTSGQKKQHNKKSSQGAKKQSSSSKSTQKNNQTSNKNSKTTNAKS
                    **************************************** *******************

    COL             SNASKTPNAKVEKAKSKIEKRTFND
    N315            SNASKTPNAKVEKANSKIEKRTFND
    NCTC8325        SNASKTPNAKVEKAKSKIEKRTFND
    Newman          SNASKTPNAKVEKAKSKIEKRTFND
    USA300_FPR3757  SNASKTPNAKVEKAKSKIEKRTFND
                    **************:**********