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Summary[edit source | edit]

  • pan ID?: SAUPAN004425000
  • symbol?: trmB
  • description?: tRNA (guanine-N(7)-)-methyltransferase

      descriptions from strain specific annotations:

    • tRNA (guanine-N(7)-)-methyltransferase
    • tRNA (guanosine(46)-N7)-methyltransferase TrmB
    • putative methyltransferase
    • tRNA (guanine46-N7-)-methyltransferase
    • tRNA (guanine-N(7)-)-methyltransferase, TrmB
    • tRNA (m(7)G46) methyltransferase
    • tRNA guanine methyltransferase
  • strand?: -
  • coordinates?: 4672502..4673146
  • synteny block?: BlockID0034230
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1798 (trmB)
    N315:
    SA1569 (trmB)
    NCTC8325:
    Newman:
    NWMN_1641 (trmB)
    USA300_FPR3757:
    04-02981:
    SA2981_1706
    08BA02176:
    C248_1794
    11819-97:
    MS7_1754 (trmB)
    71193:
    ST398NM01_1801
    ECT-R 2:
    ECTR2_1588 (trmB)
    ED133:
    SAOV_1734
    ED98:
    SAAV_1758 (trmB)
    HO 5096 0412:
    SAEMRSA15_16560
    JH1:
    SaurJH1_1838 (trmB)
    JH9:
    SaurJH9_1803 (trmB)
    JKD6008:
    SAA6008_01720 (trmB)
    JKD6159:
    SAA6159_01671 (trmB)
    LGA251:
    SARLGA251_16380
    M013:
    M013TW_1763
    MRSA252:
    SAR1833 (trmB)
    MSHR1132:
    SAMSHR1132_15980
    MSSA476:
    SAS1674 (trmB)
    Mu3:
    SAHV_1734 (trmB)
    Mu50:
    SAV1748 (trmB)
    MW2:
    MW1691 (trmB)
    RF122:
    SAB1608c (trmB)
    ST398:
    SAPIG1801 (trmB)
    T0131:
    SAT0131_01857
    TCH60:
    HMPREF0772_11404 (trmB)
    TW20:
    SATW20_17380
    USA300_TCH1516:
    USA300HOU_1738 (trmB)
    VC40:
    SAVC_07950 (trmB)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MRVRYKPWAKDYLKDHPELVDMDGQHAGKMTEWFDKTQPIHIEIGSGMGQFITTLAAQNP
    N315            MRVRYKPWAEDYLKDHPELVDMEGQHAGEMTEWFDKTQPIHIEIGSGMGQFITTLAAQNP
    NCTC8325        MRVRYKPWAEDYLKDHPELVDMDGQHAGKMTEWFDKTQPIHIEIGSGMGQFITTLAAQNP
    Newman          MRVRYKPWAKDYLKDHPELVDMDGQHAGKMTEWFDKTQPIHIEIGSGMGQFITTLAAQNP
    USA300_FPR3757  MRVRYKPWAEDYLKDHPELVDMDGQHAGKMTEWFDKTQPIHIEIGSGMGQFITTLAAQNP
                    *********:************:*****:*******************************

    COL             HINYISMEREKSIVYKVLDKVKEMGLTNLKIICNDAIELNEYFKDGEVSRIYLNFSDPWP
    N315            HINYISMEREKSIVYKVLDKVKEMGLTNLKIICNDAIELNEYFKDGEVSRIYLNFSDPWP
    NCTC8325        HINYISMEREKSIVYKVLDKVKEMGLTNLKIICNDAIELNEYFKDGEVSRIYLNFSDPWP
    Newman          HINYISMEREKSIVYKVLDKVKEMGLTNLKIICNDAIELNEYFKDGEVSRIYLNFSDPWP
    USA300_FPR3757  HINYISMEREKSIVYKVLDKVKEMGLTNLKIICNDAIELNEYFKDGEVSRIYLNFSDPWP
                    ************************************************************

    COL             KNRHAKRRLTYHTFLALYQQILNDEGDLHFKTDNRGLFAYSLESMSQFGMYFTKINLNLH
    N315            KNRHAKRRLTYHTFLALYQQILNDEGDLHFKTDNRGLFAYSLESMSQFGMYFTKINLNLH
    NCTC8325        KNRHAKRRLTYHTFLALYQQILNDEGDLHFKTDNRGLFAYSLESMSQFGMYFTKINLNLH
    Newman          KNRHAKRRLTYHTFLALYQQILNDEGDLHFKTDNRGLFAYSLESMSQFGMYFTKINLNLH
    USA300_FPR3757  KNRHAKRRLTYHTFLALYQQILNDEGDLHFKTDNRGLFAYSLESMSQFGMYFTKINLNLH
                    ************************************************************

    COL             QEDDGSNILTEYEKKFSDKGSRIYRMEAKFHSQK
    N315            QEDDGSNILTEYEKKFSDKGSRIYRMEAKFHSQK
    NCTC8325        QEDDGSNILTEYEKKFSDKGSRIYRMEAKFHSQK
    Newman          QEDDGSNILTEYEKKFSDKGSRIYRMEAKFHSQK
    USA300_FPR3757  QEDDGSNILTEYEKKFSDKGSRIYRMEAKFHSQK
                    **********************************