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Summary[edit | edit source]

  • pan ID?: SAUPAN004509000
  • symbol?:
  • synonym:
  • description?: membrane protein insertion efficiency factor YidD

      descriptions from strain specific annotations:

    • membrane protein insertion efficiency factor YidD
    • hypothetical protein with hemolytic domain
    • alpha-hemolysin
    • protein YidD
    • YidD
  • strand?: +
  • coordinates?: 4738678..4738950
  • synteny block?: BlockID0035000
  • occurrence?: in 97% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1750 (yidD)
    08BA02176:
    C248_1839
    11819-97:
    MS7_1793
    6850:
    RSAU_001647
    71193:
    ST398NM01_1843
    ECT-R 2:
    ECTR2_1630
    ED133:
    SAOV_1775
    ED98:
    SAAV_1804
    HO 5096 0412:
    SAEMRSA15_17020
    JH1:
    SaurJH1_1881
    JH9:
    SaurJH9_1845
    JKD6008:
    SAA6008_01770
    JKD6159:
    SAA6159_01712
    LGA251:
    SARLGA251_16780
    M013:
    M013TW_1804
    MRSA252:
    SAR1875
    MSHR1132:
    SAMSHR1132_16390
    MSSA476:
    SAS1715
    Mu3:
    SAHV_1780
    Mu50:
    SAV1795
    MW2:
    MW1733
    RF122:
    SAB1649
    ST398:
    SAPIG1843
    T0131:
    SAT0131_01910 (fnbA)
    TCH60:
    HMPREF0772_11362
    TW20:
    SATW20_17840
    USA300_TCH1516:
    USA300HOU_1782
    VC40:
    SAVC_08185

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MKKIFLAMIHFYQRFISPLTPPTCRFYPTCSEYTREAIQYHGAFKGLYLGIRRILKCHPL
    N315            MKKIFLAMIHFYQRFISPLTPPTCRFYPTCSEYTREAIQYHGAFKGLYLGIRRILKCHPL
    NCTC8325        MKKIFLAMIHFYQRFISPLTPPTCRFYPTCSEYTREAIQYHGAFKGLYLGIRRILKCHPL
    USA300_FPR3757  MKKIFLAMIHFYQRFISPLTPPTCRFYPTCSEYTREAIQYHGAFKGLYLGIRRILKCHPL
                    ************************************************************

    COL             HKGGFDPVPLKKDKSASKHSHKHNH
    N315            HKGGFDPVPLKKDKSASKHSHKHNH
    NCTC8325        HKGGFDPVPLKKDKSASKHSHKHNH
    USA300_FPR3757  HKGGFDPVPLKKDKSASKHSHKHNH
                    *************************