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Summary[edit | edit source]

  • pan ID?: SAUPAN004512000
  • symbol?:
  • synonym:
  • description?: DUF4909 domain-containing protein

      descriptions from strain specific annotations:

    • DUF4909 domain-containing protein
    • lipoprotein, putative
    • putative lipoprotein
    • pseudogene
  • strand?: -
  • coordinates?: 4741591..4742032
  • synteny block?: BlockID0035030
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1753
    08BA02176:
    C248_1842
    11819-97:
    MS7_1796
    6850:
    RSAU_001650
    71193:
    ST398NM01_1845
    ECT-R 2:
    ECTR2_1632
    ED133:
    SAOV_1778
    ED98:
    SAAV_1807
    HO 5096 0412:
    SAEMRSA15_17050
    JH1:
    SaurJH1_1884
    JH9:
    SaurJH9_1848
    JKD6008:
    SAA6008_01773
    JKD6159:
    SAA6159_01715
    LGA251:
    SARLGA251_16810
    M013:
    M013TW_1807
    MRSA252:
    SAR1878
    MSHR1132:
    SAMSHR1132_16420
    MSSA476:
    SAS1718
    Mu3:
    SAHV_1783
    Mu50:
    SAV1798
    MW2:
    MW1736
    RF122:
    SAB1652c
    ST398:
    SAPIG1845
    T0131:
    SAT0131_01913
    TCH60:
    HMPREF0772_11359
    TW20:
    SATW20_17870
    USA300_TCH1516:
    USA300HOU_1785
    VC40:
    SAVC_08200

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MKKFLKFKGMKICLMLYLLIFLSSCSTNNKIVGQRFEIQQHNETIGSIYFSADYAHIRGI
    N315            MKKFLKFKGMKICLMLYLLIFLSSCGTNNKIVGQRFEIQQHNETIGSIYFSADYAHIRGI
    NCTC8325        ---------MKICLMLYLLIFLSSCSTNNKIVGQRFEIQQHNETIGSIYFSADYAHIRGI
    Newman          MKKFLKFKGMKICLMLYLLIFLSSCSTNNKIVGQRFEIQQHNETIGSIYFSADYAHIRGI
    USA300_FPR3757  ---------MKICLMLYLLIFLSSCSTNNKIVGQRFEIQQHNETIGSIYFSADYAHIRGI
                             ****************.**********************************

    COL             EKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIENLDDEVF
    N315            EKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIENLDDEVF
    NCTC8325        EKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIENLDDEVF
    Newman          EKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIENLDDEVF
    USA300_FPR3757  EKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIENLDDEVF
                    ************************************************************

    COL             HLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN
    N315            HLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN
    NCTC8325        HLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN
    Newman          HLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN
    USA300_FPR3757  HLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN
                    ****************************************