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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN004573000
  • symbol?: epiE
  • description?: epidermin immunity protein F

      descriptions from strain specific annotations:

    • epidermin immunity protein F
    • lantibiotic epidermin immunity protein F
    • lantibiotic ABC transporter protein
    • epidermin ABC transporter membrane protein
    • lantibiotic immunity protein
    • lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein
    • transport protein
    • putative lantibiotic ABC transporter protein
  • strand?: -
  • coordinates?: 4805753..4806514
  • synteny block?: BlockID0035600
  • occurrence?: in 44% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1872 (epiE)
    N315:
    NCTC8325:
    Newman:
    NWMN_1710 (bsaE)
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    MS7_1817
    71193:
    ECT-R 2:
    ED133:
    SAOV_1801
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    JKD6159:
    LGA251:
    SARLGA251_17000
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    SAS1740
    Mu3:
    Mu50:
    MW2:
    MW1759 (bsaE)
    RF122:
    SAB1677c
    ST398:
    T0131:
    SAT0131_01938
    TCH60:
    TW20:
    SATW20_18140
    USA300_TCH1516:
    USA300HOU_1809 (epiE)
    VC40:
    SAVC_08320

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MIHLKIEGIKFKNSFSMYVLLISPLVFLCFAIFTVLFAKSNTGTANSVSPYITLLFNIWP
    NCTC8325        MIHLKIEGIKFKNSFSMYVLLISPLVFLCFAIFTVLFAKSNTGTANSVSPYITLLFNIWP
    Newman          MIHLKIEGIKFKNSFSMYVLLISPLVFLCFAIFTVLFAKSNTGTANSVSPYITLLFNIWP
    USA300_FPR3757  MIHLKIEGIKFKNSFSMYVLLISPLVFLCFAIFTVLFAKSNTGTANSVSPYITLLFNIWP
                    ************************************************************

    COL             IAFIPIVLCMACNSLFKIEMRNKSFNYYLSNNWSITKEIRAKIFILSIAFLVHCFLVFII
    NCTC8325        IAFIPIVLCMACNSLFKIEMRNKSFNYYLSNNWSITKEIRAKIFILSIAFLVHCFLVFII
    Newman          IAFIPIVLCMACNSLFKIEMRNKSFNYYLSNNWSITKEIRAKIFILSIAFLVHCFLVFII
    USA300_FPR3757  IAFIPIVLCMACNSLFKIEMRNKSFNYYLSNNWSITKEIRAKIFILSIAFLVHCFLVFII
                    ************************************************************

    COL             AYIGDLIINPHPVNAMLLLVTILLMYVVSLPLIPLNFLLTRYFGVFVSILINLVLSVICV
    NCTC8325        AYIGDLIINPHPVNAMLLLVTILLMYVVSLPLIPLNFLLTRYFGVFVSILINLVLSVICV
    Newman          AYIGDLIINPHPVNAMLLLVTILLMYVVSLPLIPLNFLLTRYFGVFVSILINLVLSVICV
    USA300_FPR3757  AYIGDLIINPHPVNAMLLLVTILLMYVVSLPLIPLNFLLTRYFGVFVSILINLVLSVICV
                    ************************************************************

    COL             LFLTLKSLFWVLPWGIMQRIPLITLGILPNGLVVNHNSKYFNDLNALYISIIVSIIIFAI
    NCTC8325        LFLTLKSLFWVLPWGIMQRIPLITLGILPNGLVVNHNSKYFNDLNALYISIIVSIIIFAI
    Newman          LFLTLKSLFWVLPWGIMQRIPLITLGILPNGLVVNHNSKYFNDLNALYISIIVSIIIFAI
    USA300_FPR3757  LFLTLKSLFWVLPWGIMQRIPLITLGILPNGLVVNHNSKYFNDLNALYISIIVSIIIFAI
                    ************************************************************

    COL             VTFLNNKKSWRLK
    NCTC8325        VTFLNNKKSWRLK
    Newman          VTFLNNKKSWRLK
    USA300_FPR3757  VTFLNNKKSWRLK
                    *************