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Summary[edit source | edit]

  • pan ID?: SAUPAN004758000
  • symbol?: hemE
  • description?: uroporphyrinogen decarboxylase

      descriptions from strain specific annotations:

    • uroporphyrinogen decarboxylase
    • Uroporphyrinogen III decarboxylase
  • strand?: -
  • coordinates?: 4972783..4973820
  • synteny block?: BlockID0036900
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1889 (hemE)
    N315:
    SA1652 (hemE)
    NCTC8325:
    Newman:
    NWMN_1725 (hemE)
    USA300_FPR3757:
    04-02981:
    SA2981_1790 (hemE)
    08BA02176:
    C248_1875 (hemE)
    11819-97:
    MS7_1839 (hemE)
    71193:
    ST398NM01_1899
    ECT-R 2:
    ECTR2_1676 (hemE)
    ED133:
    SAOV_1829 (hemE)
    ED98:
    SAAV_1852 (hemE)
    HO 5096 0412:
    SAEMRSA15_17380 (hemE)
    JH1:
    SaurJH1_1921 (hemE)
    JH9:
    SaurJH9_1887 (hemE)
    JKD6008:
    SAA6008_01791 (hemE)
    JKD6159:
    SAA6159_01762 (hemE)
    LGA251:
    SARLGA251_17170 (hemE)
    M013:
    M013TW_1840
    MRSA252:
    SAR1925 (hemE)
    MSHR1132:
    SAMSHR1132_16800
    MSSA476:
    SAS1755 (hemE)
    Mu3:
    SAHV_1819 (hemE)
    Mu50:
    SAV1834 (hemE)
    MW2:
    MW1774 (hemE)
    RF122:
    SAB1765c (hemE)
    ST398:
    SAPIG1899 (hemE)
    T0131:
    SAT0131_01953
    TCH60:
    HMPREF0772_11311 (hemE)
    TW20:
    SATW20_18280 (hemE)
    USA300_TCH1516:
    USA300HOU_1825 (hemE)
    VC40:
    SAVC_08400 (hemE)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MVHNKNNTILKMIKGEETSHTPVWFMRQAGRSQPEYRKLKEKYSLFDITHQPELCAYVTH
    N315            MVHNKNNTILKMIKGEETSHTPVWFMRQAGRSQPEYRKLKEKYSLFDITHQPELCAYVTH
    NCTC8325        MVHNKNNTILKMIKGEETSHTPVWFMRQAGRSQPEYRKLKEKYSLFDITHQPELCAYVTH
    Newman          MVHNKNNTILKMIKGEETSHTPVWFMRQAGRSQPEYRKLKEKYSLFDITHQPELCAYVTH
    USA300_FPR3757  MVHNKNNTILKMIKGEETSHTPVWFMRQAGRSQPEYRKLKEKYSLFDITHQPELCAYVTH
                    ************************************************************

    COL             LPVDNYHTDAAILYKDIMTPLKPIGVDVEIKSGIGPVIHNPIKTIQDVEKLSQIDPERDV
    N315            LPVDNYHTDAAILYKDIMTPLKPIGVDVEIKSGIGPVIHNPIKTIQDVEKLSQIDPERDV
    NCTC8325        LPVDNYHTDAAILYKDIMTPLKPIGVDVEIKSGIGPVIHNPIKTIQDVEKLSQIDPERDV
    Newman          LPVDNYHTDAAILYKDIMTPLKPIGVDVEIKSGIGPVIHNPIKTIQDVEKLSQIDPERDV
    USA300_FPR3757  LPVDNYHTDAAILYKDIMTPLKPIGVDVEIKSGIGPVIHNPIKTIQDVEKLSQIDPERDV
                    ************************************************************

    COL             PYVLDTIKLLTEEKLNVPLIGFTGAPFTLASYMIEGGPSKNYNFTKAMMYRDEATWFALM
    N315            PYVLDTIKLLTEEKLNVPLIGFTGAPFTLASYMIEGGPSKNYNFTKAMMYRDEATWFALM
    NCTC8325        PYVLDTIKLLTEEKLNVPLIGFTGAPFTLASYMIEGGPSKNYNFTKAMMYRDEATWFALM
    Newman          PYVLDTIKLLTEEKLNVPLIGFTGAPFTLASYMIEGGPSKNYNFTKAMMYRDEATWFALM
    USA300_FPR3757  PYVLDTIKLLTEEKLNVPLIGFTGAPFTLASYMIEGGPSKNYNFTKAMMYRDEATWFALM
                    ************************************************************

    COL             NHLVDVSVKYVTAQVEAGAELIQIFDSWVGALNVEDYRRYIKPHMIRLISEVKEKHDVPV
    N315            NHLVDVSVKYVTAQVEAGAELIQIFDSWVGALNVEDYRRYIKPHMIRLISEVKEKHDVPV
    NCTC8325        NHLVDVSVKYVTAQVEAGAELIQIFDSWVGALNVEDYRRYIKPHMIRLISEVKEKHDVPV
    Newman          NHLVDVSVKYVTAQVEAGAELIQIFDSWVGALNVEDYRRYIKPHMIRLISEVKEKHDVPV
    USA300_FPR3757  NHLVDVSVKYVTAQVEAGAELIQIFDSWVGALNVEDYRRYIKPHMIRLISEVKEKHDVPV
                    ************************************************************

    COL             ILFGVGASHLINEWNDLPIDVLGLDWRTSINQAQQLGVTKTLQGNLDPSILLAPWNVIEE
    N315            ILFGVGASHLINEWNDLPIDVLGLDWRTSINQAQQLGVTKTLQGNLDPSILLAPWNVIEE
    NCTC8325        ILFGVGASHLINEWNDLPIDVLGLDWRTSINQAQQLGVTKTLQGNLDPSILLAPWNVIEE
    Newman          ILFGVGASHLINEWNDLPIDVLGLDWRTSINQAQQLGVTKTLQGNLDPSILLAPWNVIEE
    USA300_FPR3757  ILFGVGASHLINEWNDLPIDVLGLDWRTSINQAQQLGVTKTLQGNLDPSILLAPWNVIEE
                    ************************************************************

    COL             RLKPILDQGMENGKHIFNLGHGVFPEVQPETLRKVSEFVHTYTQR
    N315            RLKPILDQGMENGKHIFNLGHGVFPEVQPETLRKVSEFVHTYTQR
    NCTC8325        RLKPILDQGMENGKHIFNLGHGVFPEVQPETLRKVSEFVHTYTQR
    Newman          RLKPILDQGMENGKHIFNLGHGVFPEVQPETLRKVSEFVHTYTQR
    USA300_FPR3757  RLKPILDQGMENGKHIFNLGHGVFPEVQPETLRKVSEFVHTYTQR
                    *********************************************