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Summary[edit source | edit]

  • pan ID?: SAUPAN004920000
  • symbol?:
  • description?: Permease
  • strand?: -
  • coordinates?: 5109241..5109771
  • synteny block?: BlockID0038260
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1852
    08BA02176:
    C248_1970
    11819-97:
    MS7_1931
    71193:
    ST398NM01_1989
    ECT-R 2:
    ECTR2_1767
    ED133:
    SAOV_1995
    ED98:
    SAAV_1962
    HO 5096 0412:
    SAEMRSA15_18030
    JH1:
    SaurJH1_1984
    JH9:
    SaurJH9_1950
    JKD6008:
    SAA6008_01916
    JKD6159:
    SAA6159_01827
    LGA251:
    SARLGA251_17780
    M013:
    M013TW_1932
    MRSA252:
    SAR1987
    MSHR1132:
    SAMSHR1132_17410
    MSSA476:
    SAS1818
    Mu3:
    SAHV_1881
    Mu50:
    SAV1896
    MW2:
    MW1837
    RF122:
    SAB1828c
    ST398:
    SAPIG1989
    T0131:
    SAT0131_02021 (gapR)
    TCH60:
    HMPREF0772_11247
    TW20:
    SATW20_18900
    USA300_TCH1516:
    USA300HOU_1895
    VC40:
    SAVC_08740

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIIL
    N315            MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIIL
    NCTC8325        MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIIL
    Newman          MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIIL
    USA300_FPR3757  MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIIL
                    ************************************************************

    COL             LILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSTGLL
    N315            LILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSTGLL
    NCTC8325        LILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSTGLL
    Newman          LILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSTGLL
    USA300_FPR3757  LILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSTGLL
                    ************************************************************

    COL             ILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
    N315            ILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
    NCTC8325        ILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
    Newman          ILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
    USA300_FPR3757  ILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
                    ********************************************************