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Summary[edit source | edit]

  • pan ID?: SAUPAN004929000
  • symbol?: putP
  • description?: high affinity proline permease

      descriptions from strain specific annotations:

    • high affinity proline permease
    • sodium:proline symporter
    • Sodium/proline symporter
    • SSS family major sodium/proline symporter
    • SSS family proline:sodium (Na+) symporter
    • SSS family solute:sodium (Na+)/proline symporter
  • strand?: +
  • coordinates?: 5117189..5118736
  • synteny block?: BlockID0038350
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    SA1718 (putP)
    NCTC8325:
    Newman:
    NWMN_1840 (putP)
    USA300_FPR3757:
    04-02981:
    SA2981_1859 (putP)
    08BA02176:
    C248_1977 (putP)
    11819-97:
    MS7_1937 (putP)
    71193:
    ST398NM01_1996
    ECT-R 2:
    ECTR2_1774 (putP)
    ED133:
    SAOV_2002
    ED98:
    SAAV_1968
    HO 5096 0412:
    SAEMRSA15_18090 (putP)
    JH1:
    SaurJH1_1991
    JH9:
    SaurJH9_1957
    JKD6008:
    SAA6008_01923 (putP)
    JKD6159:
    SAA6159_01833 (putP)
    LGA251:
    SARLGA251_17850 (putP)
    M013:
    M013TW_1939
    MRSA252:
    SAR1994 (putP)
    MSHR1132:
    SAMSHR1132_17470
    MSSA476:
    SAS1825
    Mu3:
    SAHV_1887 (putP)
    Mu50:
    SAV1902 (putP)
    MW2:
    MW1843 (putP)
    RF122:
    SAB1835 (putP)
    ST398:
    SAPIG1996 (putP)
    T0131:
    SAT0131_02029 (srtA)
    TCH60:
    HMPREF0772_11240 (putP)
    TW20:
    SATW20_18970 (putP)
    USA300_TCH1516:
    USA300HOU_1903 (putP)
    VC40:
    SAVC_08770

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MLTMGTALSQQVDANWQTYIMIAVYFLILIVIGFYGYKQATGNLSEYMLGGRSIGPYITA
    N315            MLTMGTALSQQVDANWQTYIMIAVYFLILIVIGFYGYKQATGNLSEYMLGGRSIGPYITA
    NCTC8325        MLTMGTALSQQVDANWQTYIMIAVYFLILIVIGFYGYKQATGNLSEYMLGGRSIGPYITA
    Newman          ---MGTALSQQVDANWQTYIMIAVYFLILIVIGFYGYKQATGNLSEYMLGGRSIGPYITA
    USA300_FPR3757  MLTMGTALSQQVDANWQTYIMIAVYFLILIVIGFYGYKQATGNLSEYMLGGRSIGPYITA
                       *********************************************************

    COL             LSAGASDMSGWMIMGLPGSVYSTGLSAMWITIGLTLGAYINYFVVAPRLRVYTELAGDAI
    N315            LSAGASDMSGWMIMGLPGSVYSTGLSAMWITIGLTLGAYINYFVVAPRLRVYTELAGDAI
    NCTC8325        LSAGASDMSGWMIMGLPGSVYSTGLSAMWITIGLTLGAYINYFVVAPRLRVYTELAGDAI
    Newman          LSAGASDMSGWMIMELPGSVYSTGLSAMWITIGLTLGAYINYFVVAPRLRVYTELAGDAI
    USA300_FPR3757  LSAGASDMSGWMIMGLPGSVYSTGLSAMWITIGLTLGAYINYFVVAPRLRVYTELAGDAI
                    ************** *********************************************

    COL             TLPDFFKNRLNDKNNVLKIISGLIIVVFFTLYTHSGFVSGGKLFESAFGLDYHFGLILVA
    N315            TLPDFFKNRLNDKNNVLKIISGLIIVVFFTLYTHSGFVSGGKLFESAFGLDYHFGLILVA
    NCTC8325        TLPDFFKNRLNDKNNVLKIISGLIIVVFFTLYTHSGFVSGGKLFESAFGLDYHFGLILVA
    Newman          TLPDFFKNRLNDKNNVLKIISGLIIVVFFTLYTHSGFVSGGKLFESAFGLDYHFGLILVA
    USA300_FPR3757  TLPDFFKNRLNDKNNVLKIISGLIIVVFFTLYTHSGFVSGGKLFESAFGLDYHFGLILVA
                    ************************************************************

    COL             FIVIFYTFFGGYLAVSITDFFQGVIMLIAMVMVPIVAMMNLNGWGTFHDVAAMKPTNLNL
    N315            FIVIFYTFFGGYLAVSITDFFQGVIMLIAMVMVPIVAMMNLNGWGTFHDVAAMKPTNLNL
    NCTC8325        FIVIFYTFFGGYLAVSITDFFQGVIMLIAMVMVPIVAMMNLNGWGTFHDVAAMKPTNLNL
    Newman          FIVIFYTFFGGYLAVSITDFFQGVIMLIAMVMVPIVAMMNLNGWGTFHDVAAMKPTNLNL
    USA300_FPR3757  FIVIFYTFFGGYLAVSITDFFQGVIMLIAMVMVPIVAMMNLNGWGTFHDVAAMKPTNLNL
                    ************************************************************

    COL             FKGLSFIGIISLFSWGLGYFGQPHIIVRFMSIKSHKMLPKARRLGISWMAVGLLGAVAVG
    N315            FKGLSFIGIISLFSWGLGYFGQPHIIVRFMSIKSHKMLPKARRLGISWMAVGLLGAVAVG
    NCTC8325        FKGLSFIGIISLFSWGLGYFGQPHIIVRFMSIKSHKMLPKARRLGISWMAVGLLGAVAVG
    Newman          FKGLSFIGIISLFSWGLGYFGQPHIIVRFMSIKSHKMLPKARRLGISWMAVGLLGAVAVG
    USA300_FPR3757  FKGLSFIGIISLFSWGLGYFGQPHIIIRFMSIKSHKMLPKARRLGISWMAVGLLGAVAVG
                    **************************:*********************************

    COL             LTGIAFVPAYHIKLEDPETLFIVMSQVLFHPLVGGFLLAAILAAIMSTISSQLLVTSSSL
    N315            LTGIAFVPAYHIKLEDPETLFIVMSQVLFHPLVGGFLLAAILAAIMSTISSQLLVTSSSL
    NCTC8325        LTGIAFVPAYHIKLEDPETLFIVMSQVLFHPLVGGFLLAAILAAIMSTISSQLLVTSSSL
    Newman          LTGIAFVPAYHIKLEDPETLFIVMSQVLFHPLVGGFLLAAILAAIMSTISSQLLVTSSSL
    USA300_FPR3757  LTGIAFVPAYHIKLEDPETLFIVMSQVLFHPLVGGFLLAAILAAIMSTISSQLLVTSSSL
                    ************************************************************

    COL             TEDFYKLIRGEEKAKTHQKEFVMIGRLSVLVVAIVAIAIAWNPNDTILNLVGNAWAGFGA
    N315            TEDFYKLIRGEEKAKTHQKEFVMIGRLSVLVVAIVAIAIAWNPNDTILNLVGNAWAGFGA
    NCTC8325        TEDFYKLIRGEEKAKTHQKEFVMIGRLSVLVVAIVAIAIAWNPNDTILNLVGNAWAGFGA
    Newman          TEDFYKLIRGEEKAKTHQKEFVMIGRLSVLVVAIVAIAIAWNPNDTILNLVGNAWAGFGA
    USA300_FPR3757  TEDFYKLIRGEEKAKTHQKEFVMIGRLSVLVVAIVAIAIAWNPNDTILNLVGNAWAGFGA
                    ************************************************************

    COL             SFSPLVLFALYWKGLTRAGAVSGMVSGALVVIVWIAWIKPLAHINEIFGLYEIIPGFIVS
    N315            SFSPLVLFALYWKGLTRAGAVSGMVSGALVVIVWIAWIKPLAHINEIFGLYEIIPGFIVS
    NCTC8325        SFSPLVLFALYWKGLTRAGAVSGMVSGALVVIVWIAWIKPLAHINEIFGLYEIIPGFIVS
    Newman          SFSPLVLFALYWKGLTRAGAVSGMVSGALVVIVWIAWIKPLAHINEIFGLYEIIPGFIVS
    USA300_FPR3757  SFSPLVLFALYWKGLTRAGAVSGMVSGALVVIVWIAWIKPLAHINEIFGLYEIIPGFIVS
                    ************************************************************

    COL             VIVTYVVSKLTKKPGAFVETDLNKVRDIVREK
    N315            VIVTYVVSKLTKKPGAFVETDLNKVRDIVREK
    NCTC8325        VIVTYVVSKLTKKPGAFVETDLNKVRDIVREK
    Newman          VIVTYVVSKLTKKPGAFVETDLNKVRDIVREK
    USA300_FPR3757  VIVTYVVSKLTKKPGAFVETDLNKVRDIVREK
                    ********************************